miRNA display CGI


Results 21 - 40 of 339 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31025 5' -58.1 NC_006560.1 + 56305 0.66 0.860622
Target:  5'- cGCGGccGCCguagugCGcGGAGAcgUCGGGCCGcuuGCa -3'
miRNA:   3'- -CGCC--UGG------GC-CCUCU--AGCUCGGCuu-CG- -5'
31025 5' -58.1 NC_006560.1 + 71658 0.66 0.860622
Target:  5'- cGUGGACgCGGGcc-UCG-GCCGGcGGCg -3'
miRNA:   3'- -CGCCUGgGCCCucuAGCuCGGCU-UCG- -5'
31025 5' -58.1 NC_006560.1 + 5354 0.66 0.859878
Target:  5'- gGCGGGCCgucgucCGGGuccggCGAGCCcgcgccgccgagcGGAGCg -3'
miRNA:   3'- -CGCCUGG------GCCCucua-GCUCGG-------------CUUCG- -5'
31025 5' -58.1 NC_006560.1 + 63072 0.66 0.859878
Target:  5'- cGCGcGCCCGGGAagcccucccagugGAagCG-GCCGgcGCg -3'
miRNA:   3'- -CGCcUGGGCCCU-------------CUa-GCuCGGCuuCG- -5'
31025 5' -58.1 NC_006560.1 + 71993 0.66 0.857634
Target:  5'- uGCGGGCCgGGGAGGUguacaccuaccugaCGuacuacacccaggAGCacccCGAGGCg -3'
miRNA:   3'- -CGCCUGGgCCCUCUA--------------GC-------------UCG----GCUUCG- -5'
31025 5' -58.1 NC_006560.1 + 59263 0.66 0.853094
Target:  5'- -gGGGCCCcGGAGcUCcAGCCGAcaGGUc -3'
miRNA:   3'- cgCCUGGGcCCUCuAGcUCGGCU--UCG- -5'
31025 5' -58.1 NC_006560.1 + 84416 0.66 0.853094
Target:  5'- gGCGcGGCCaGGGccg-CGGGCCGgcGCu -3'
miRNA:   3'- -CGC-CUGGgCCCucuaGCUCGGCuuCG- -5'
31025 5' -58.1 NC_006560.1 + 6813 0.66 0.853094
Target:  5'- cGgGGGCUCGGGGGGacCGGGgggaCCGggGg -3'
miRNA:   3'- -CgCCUGGGCCCUCUa-GCUC----GGCuuCg -5'
31025 5' -58.1 NC_006560.1 + 43353 0.66 0.853094
Target:  5'- cGCGGGCCCGcGGGcGUacuGGCUGguGCa -3'
miRNA:   3'- -CGCCUGGGC-CCUcUAgc-UCGGCuuCG- -5'
31025 5' -58.1 NC_006560.1 + 65050 0.66 0.853094
Target:  5'- cCGGGCgCGGGGGcagGGGCCGcGGGUg -3'
miRNA:   3'- cGCCUGgGCCCUCuagCUCGGC-UUCG- -5'
31025 5' -58.1 NC_006560.1 + 78084 0.66 0.853094
Target:  5'- cGCGGcGCUCGGGGGccUCGAcgGCCcccGGGCg -3'
miRNA:   3'- -CGCC-UGGGCCCUCu-AGCU--CGGc--UUCG- -5'
31025 5' -58.1 NC_006560.1 + 97177 0.66 0.853094
Target:  5'- cGCGucGACCuCGcGGAcugcGUCGGGCgCGAGGCc -3'
miRNA:   3'- -CGC--CUGG-GC-CCUc---UAGCUCG-GCUUCG- -5'
31025 5' -58.1 NC_006560.1 + 105095 0.66 0.853094
Target:  5'- cGCGGggccgGCCCGGGAaGGggagCGGGaCCGcuacuGGGCc -3'
miRNA:   3'- -CGCC-----UGGGCCCU-CUa---GCUC-GGC-----UUCG- -5'
31025 5' -58.1 NC_006560.1 + 148495 0.66 0.853094
Target:  5'- cGCGGAggccuCCCGGcGGGAcggCGGuCCGAcGGCg -3'
miRNA:   3'- -CGCCU-----GGGCC-CUCUa--GCUcGGCU-UCG- -5'
31025 5' -58.1 NC_006560.1 + 1493 0.66 0.852331
Target:  5'- cGCGcGGCCCacgccggcGGGAGcgcgugcAUCGGGCCccgGGCg -3'
miRNA:   3'- -CGC-CUGGG--------CCCUC-------UAGCUCGGcu-UCG- -5'
31025 5' -58.1 NC_006560.1 + 130846 0.66 0.848486
Target:  5'- cUGGugcCCCGGGGcuacgaguacuucgcGGuUCGGGCCGAGGg -3'
miRNA:   3'- cGCCu--GGGCCCU---------------CU-AGCUCGGCUUCg -5'
31025 5' -58.1 NC_006560.1 + 132188 0.66 0.845377
Target:  5'- cGCGcACCaccugCGGGAcGUCcuGGCCGAGGCg -3'
miRNA:   3'- -CGCcUGG-----GCCCUcUAGc-UCGGCUUCG- -5'
31025 5' -58.1 NC_006560.1 + 119124 0.66 0.845377
Target:  5'- cGCGGGCgCCGGu---UCGuGCCGccGGGCg -3'
miRNA:   3'- -CGCCUG-GGCCcucuAGCuCGGC--UUCG- -5'
31025 5' -58.1 NC_006560.1 + 89304 0.66 0.845377
Target:  5'- cCGGccguuCCCGGcGGGAccUCagacGGCCGggGCg -3'
miRNA:   3'- cGCCu----GGGCC-CUCU--AGc---UCGGCuuCG- -5'
31025 5' -58.1 NC_006560.1 + 67010 0.66 0.845377
Target:  5'- cGCGaGGgCgGaGGAGGguaUCGGGCCGucGCg -3'
miRNA:   3'- -CGC-CUgGgC-CCUCU---AGCUCGGCuuCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.