Results 21 - 40 of 155 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31026 | 3' | -64.2 | NC_006560.1 | + | 25060 | 0.66 | 0.604875 |
Target: 5'- cCGcG-CGCGaGGCGgccGCCGCCGGCgcgCcCGa -3' miRNA: 3'- -GC-CaGCGC-CCGC---UGGCGGCCGa--GaGC- -5' |
|||||||
31026 | 3' | -64.2 | NC_006560.1 | + | 99947 | 0.66 | 0.604875 |
Target: 5'- aCGGgagggCGCGGGUacgcgGugCGCCGucGCUCgcgUCGg -3' miRNA: 3'- -GCCa----GCGCCCG-----CugGCGGC--CGAG---AGC- -5' |
|||||||
31026 | 3' | -64.2 | NC_006560.1 | + | 99146 | 0.66 | 0.604875 |
Target: 5'- gGGUCGCcggccucgccggGGGCGGCCGUCccgGGCgccgCGc -3' miRNA: 3'- gCCAGCG------------CCCGCUGGCGG---CCGaga-GC- -5' |
|||||||
31026 | 3' | -64.2 | NC_006560.1 | + | 21689 | 0.66 | 0.604875 |
Target: 5'- --cUCGaCGGGCGgcGCCGCCGGC-Cg-- -3' miRNA: 3'- gccAGC-GCCCGC--UGGCGGCCGaGagc -5' |
|||||||
31026 | 3' | -64.2 | NC_006560.1 | + | 21650 | 0.66 | 0.604875 |
Target: 5'- --cUCGaCGGGCGgcGCCGCCGGC-Cg-- -3' miRNA: 3'- gccAGC-GCCCGC--UGGCGGCCGaGagc -5' |
|||||||
31026 | 3' | -64.2 | NC_006560.1 | + | 81066 | 0.66 | 0.604875 |
Target: 5'- uGGUCGUGGGUGugguCCaCgGGCUgcgcCUCGu -3' miRNA: 3'- gCCAGCGCCCGCu---GGcGgCCGA----GAGC- -5' |
|||||||
31026 | 3' | -64.2 | NC_006560.1 | + | 26523 | 0.66 | 0.604875 |
Target: 5'- gGGcCGUGGGCGGgCGCgcgcggGGC-CUCGu -3' miRNA: 3'- gCCaGCGCCCGCUgGCGg-----CCGaGAGC- -5' |
|||||||
31026 | 3' | -64.2 | NC_006560.1 | + | 18828 | 0.66 | 0.604875 |
Target: 5'- gGGUgCGuCGGGCGGcuCCGCgaGGCcgcgUCUCGc -3' miRNA: 3'- gCCA-GC-GCCCGCU--GGCGg-CCG----AGAGC- -5' |
|||||||
31026 | 3' | -64.2 | NC_006560.1 | + | 56129 | 0.66 | 0.599155 |
Target: 5'- cCGGUCGgGGGCGcuGucguagaccagccuuCCGCCGGC-CgggaCGg -3' miRNA: 3'- -GCCAGCgCCCGC--U---------------GGCGGCCGaGa---GC- -5' |
|||||||
31026 | 3' | -64.2 | NC_006560.1 | + | 24593 | 0.66 | 0.595346 |
Target: 5'- uGGgcgCGCaGGGCGugCuCCuGCUCUCc -3' miRNA: 3'- gCCa--GCG-CCCGCugGcGGcCGAGAGc -5' |
|||||||
31026 | 3' | -64.2 | NC_006560.1 | + | 66328 | 0.66 | 0.595346 |
Target: 5'- gGGUUGCcGGUGugCGC-GGC-CUCGu -3' miRNA: 3'- gCCAGCGcCCGCugGCGgCCGaGAGC- -5' |
|||||||
31026 | 3' | -64.2 | NC_006560.1 | + | 84499 | 0.66 | 0.595346 |
Target: 5'- gCGGUacCGCGGcGUGuuCGCCGcGCUCgCGc -3' miRNA: 3'- -GCCA--GCGCC-CGCugGCGGC-CGAGaGC- -5' |
|||||||
31026 | 3' | -64.2 | NC_006560.1 | + | 27644 | 0.66 | 0.595346 |
Target: 5'- cCGGgCGCGGggcGCGGCCGCCGcggaggucGUcCUCGc -3' miRNA: 3'- -GCCaGCGCC---CGCUGGCGGC--------CGaGAGC- -5' |
|||||||
31026 | 3' | -64.2 | NC_006560.1 | + | 66153 | 0.66 | 0.595346 |
Target: 5'- ---cCGC-GGCGGCaGCUGGCUCUUGa -3' miRNA: 3'- gccaGCGcCCGCUGgCGGCCGAGAGC- -5' |
|||||||
31026 | 3' | -64.2 | NC_006560.1 | + | 85245 | 0.66 | 0.595346 |
Target: 5'- cCGGcgccCGCGGcGCGGaaGCCGGCgCUgCGg -3' miRNA: 3'- -GCCa---GCGCC-CGCUggCGGCCGaGA-GC- -5' |
|||||||
31026 | 3' | -64.2 | NC_006560.1 | + | 148969 | 0.66 | 0.595346 |
Target: 5'- gCGGUgGCGcgaccaaccGGCGG-CGCCGGCaUCaUCGa -3' miRNA: 3'- -GCCAgCGC---------CCGCUgGCGGCCG-AG-AGC- -5' |
|||||||
31026 | 3' | -64.2 | NC_006560.1 | + | 34364 | 0.67 | 0.538856 |
Target: 5'- aGGagGgGGGCGcCCGCC-GC-CUCGg -3' miRNA: 3'- gCCagCgCCCGCuGGCGGcCGaGAGC- -5' |
|||||||
31026 | 3' | -64.2 | NC_006560.1 | + | 33109 | 0.67 | 0.538856 |
Target: 5'- gGGUCGCGgggaaGGCGGCCGCgGGgaaggCGg -3' miRNA: 3'- gCCAGCGC-----CCGCUGGCGgCCgaga-GC- -5' |
|||||||
31026 | 3' | -64.2 | NC_006560.1 | + | 65955 | 0.67 | 0.538856 |
Target: 5'- gCGGUacagGCGGGCGGCgCGgugCGGCgcCUCGa -3' miRNA: 3'- -GCCAg---CGCCCGCUG-GCg--GCCGa-GAGC- -5' |
|||||||
31026 | 3' | -64.2 | NC_006560.1 | + | 121927 | 0.67 | 0.529603 |
Target: 5'- gCGGgauggacCGCGGGCccGGgCGCgCGGCUCUgCGc -3' miRNA: 3'- -GCCa------GCGCCCG--CUgGCG-GCCGAGA-GC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home