miRNA display CGI


Results 41 - 60 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31026 3' -64.2 NC_006560.1 + 127155 0.67 0.49951
Target:  5'- gGGUCGCGgcgucgagcucggcGGCGucCUGCCGGCgg-CGg -3'
miRNA:   3'- gCCAGCGC--------------CCGCu-GGCGGCCGagaGC- -5'
31026 3' -64.2 NC_006560.1 + 12523 0.67 0.496812
Target:  5'- gCGGUCGCcgggucaguaGGGCGugUcCCGGCgccgcgccgucggggUCUCGu -3'
miRNA:   3'- -GCCAGCG----------CCCGCugGcGGCCG---------------AGAGC- -5'
31026 3' -64.2 NC_006560.1 + 99273 0.67 0.493223
Target:  5'- aCGGcUGCGGGUgGGCCGgCGGCUggggUCGg -3'
miRNA:   3'- -GCCaGCGCCCG-CUGGCgGCCGAg---AGC- -5'
31026 3' -64.2 NC_006560.1 + 45776 0.67 0.493223
Target:  5'- gGGgggCGCGGGCucgguCCGCCGGggcCUUUUGg -3'
miRNA:   3'- gCCa--GCGCCCGcu---GGCGGCC---GAGAGC- -5'
31026 3' -64.2 NC_006560.1 + 85506 0.67 0.493223
Target:  5'- gGGUCGcCGGGCuGCUGCCcgcgggGGCgCUUGg -3'
miRNA:   3'- gCCAGC-GCCCGcUGGCGG------CCGaGAGC- -5'
31026 3' -64.2 NC_006560.1 + 43263 0.67 0.49054
Target:  5'- gCGGUCGUGcGCGAUgaacuccuucagggCGCCGG-UCUCGc -3'
miRNA:   3'- -GCCAGCGCcCGCUG--------------GCGGCCgAGAGC- -5'
31026 3' -64.2 NC_006560.1 + 71954 0.67 0.511279
Target:  5'- aCGGcCuGCGGGagGGCuCGCCGGCcUUCGu -3'
miRNA:   3'- -GCCaG-CGCCCg-CUG-GCGGCCGaGAGC- -5'
31026 3' -64.2 NC_006560.1 + 126372 0.67 0.511279
Target:  5'- aCGGgcucgaCGgGGGCG-CCGCCcGGgUCUCc -3'
miRNA:   3'- -GCCa-----GCgCCCGCuGGCGG-CCgAGAGc -5'
31026 3' -64.2 NC_006560.1 + 118535 0.67 0.538856
Target:  5'- uGGcCGgGGGgGACCGCCccggcuGGCUguggagccggcgCUCGg -3'
miRNA:   3'- gCCaGCgCCCgCUGGCGG------CCGA------------GAGC- -5'
31026 3' -64.2 NC_006560.1 + 34364 0.67 0.538856
Target:  5'- aGGagGgGGGCGcCCGCC-GC-CUCGg -3'
miRNA:   3'- gCCagCgCCCGCuGGCGGcCGaGAGC- -5'
31026 3' -64.2 NC_006560.1 + 33109 0.67 0.538856
Target:  5'- gGGUCGCGgggaaGGCGGCCGCgGGgaaggCGg -3'
miRNA:   3'- gCCAGCGC-----CCGCUGGCGgCCgaga-GC- -5'
31026 3' -64.2 NC_006560.1 + 65955 0.67 0.538856
Target:  5'- gCGGUacagGCGGGCGGCgCGgugCGGCgcCUCGa -3'
miRNA:   3'- -GCCAg---CGCCCGCUG-GCg--GCCGa-GAGC- -5'
31026 3' -64.2 NC_006560.1 + 121927 0.67 0.529603
Target:  5'- gCGGgauggacCGCGGGCccGGgCGCgCGGCUCUgCGc -3'
miRNA:   3'- -GCCa------GCGCCCG--CUgGCG-GCCGAGA-GC- -5'
31026 3' -64.2 NC_006560.1 + 33828 0.67 0.529603
Target:  5'- gGGUCgGCGGGgguCGGCCGCgGGCg--UGg -3'
miRNA:   3'- gCCAG-CGCCC---GCUGGCGgCCGagaGC- -5'
31026 3' -64.2 NC_006560.1 + 88561 0.67 0.528681
Target:  5'- gCGGggCGCGccugaGGCGGCCGUCGuGCacgccgacgcgcaUCUCGg -3'
miRNA:   3'- -GCCa-GCGC-----CCGCUGGCGGC-CG-------------AGAGC- -5'
31026 3' -64.2 NC_006560.1 + 148628 0.67 0.520409
Target:  5'- gCGGUCcccgaCGGGCGGgccCCGCCGGC-Cg-- -3'
miRNA:   3'- -GCCAGc----GCCCGCU---GGCGGCCGaGagc -5'
31026 3' -64.2 NC_006560.1 + 81469 0.67 0.520409
Target:  5'- cCGGgagagCGgGGGgGAgCGCCGGCcccgcggcCUCGa -3'
miRNA:   3'- -GCCa----GCgCCCgCUgGCGGCCGa-------GAGC- -5'
31026 3' -64.2 NC_006560.1 + 147063 0.67 0.511279
Target:  5'- gGGagGCGGGCGGCgaGUCGGCgaUCa -3'
miRNA:   3'- gCCagCGCCCGCUGg-CGGCCGagAGc -5'
31026 3' -64.2 NC_006560.1 + 33406 0.68 0.484306
Target:  5'- gGGgggCGCGGGCGGggagCGCCGGCg---- -3'
miRNA:   3'- gCCa--GCGCCCGCUg---GCGGCCGagagc -5'
31026 3' -64.2 NC_006560.1 + 34604 0.68 0.484306
Target:  5'- gGGcUCcgGgGGGUGGCCGCgCGGCUCg-- -3'
miRNA:   3'- gCC-AG--CgCCCGCUGGCG-GCCGAGagc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.