Results 81 - 100 of 155 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31026 | 3' | -64.2 | NC_006560.1 | + | 37535 | 0.69 | 0.391962 |
Target: 5'- uCGGccgCGCGGGCGGCCauGCC-GCUCg-- -3' miRNA: 3'- -GCCa--GCGCCCGCUGG--CGGcCGAGagc -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 4048 | 0.69 | 0.391962 |
Target: 5'- gCGG-CGCGGcGcCGGCCGCggCGGCguUCUCGc -3' miRNA: 3'- -GCCaGCGCC-C-GCUGGCG--GCCG--AGAGC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 114363 | 0.69 | 0.391962 |
Target: 5'- gCGcGUaCGCGGGCGACCGCgagGGCgacgCGa -3' miRNA: 3'- -GC-CA-GCGCCCGCUGGCGg--CCGaga-GC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 137244 | 0.69 | 0.384148 |
Target: 5'- uGGgggCGCGGGCGGCgggcgaCGCCGaGUUCcCGg -3' miRNA: 3'- gCCa--GCGCCCGCUG------GCGGC-CGAGaGC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 77114 | 0.69 | 0.381824 |
Target: 5'- aGGggCGCGGGCgGGCCGCCGccgcccgcgccccuGCUCg-- -3' miRNA: 3'- gCCa-GCGCCCG-CUGGCGGC--------------CGAGagc -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 55261 | 0.69 | 0.399878 |
Target: 5'- gCGGcCGCGGaccccGCGGCgaCGCCGGCccaCUCGa -3' miRNA: 3'- -GCCaGCGCC-----CGCUG--GCGGCCGa--GAGC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 3327 | 0.69 | 0.407896 |
Target: 5'- cCGGgggCGCGGGCGGgcggCGUCGGCg-UCGg -3' miRNA: 3'- -GCCa--GCGCCCGCUg---GCGGCCGagAGC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 72364 | 0.69 | 0.432541 |
Target: 5'- gCGGcccUCGCGGGgGcGCCGCUGGCgCUg- -3' miRNA: 3'- -GCC---AGCGCCCgC-UGGCGGCCGaGAgc -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 610 | 0.69 | 0.432541 |
Target: 5'- gCGGgcaCGCGGGUucgaAUCGCaaGGCUCUCGg -3' miRNA: 3'- -GCCa--GCGCCCGc---UGGCGg-CCGAGAGC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 99884 | 0.69 | 0.432541 |
Target: 5'- gGGUCguggcggcgGCGGGCGGCgcgggguucaUGUCGGC-CUCGg -3' miRNA: 3'- gCCAG---------CGCCCGCUG----------GCGGCCGaGAGC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 31142 | 0.69 | 0.424229 |
Target: 5'- cCGGcUCGCGGG-GACCcaaGCgGGC-CUCGc -3' miRNA: 3'- -GCC-AGCGCCCgCUGG---CGgCCGaGAGC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 65493 | 0.69 | 0.421754 |
Target: 5'- uCGGcguugCGCGGGCGGuaacccagaacuuuCCGgccagaaaCGGCUCUCGa -3' miRNA: 3'- -GCCa----GCGCCCGCU--------------GGCg-------GCCGAGAGC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 75095 | 0.69 | 0.416013 |
Target: 5'- aCGccCGCaGGGCGAUCGCgCGGCUCg-- -3' miRNA: 3'- -GCcaGCG-CCCGCUGGCG-GCCGAGagc -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 51729 | 0.69 | 0.416013 |
Target: 5'- uGGgccgacgCGCGGGCGGCCuCgCGGCgcaUCGa -3' miRNA: 3'- gCCa------GCGCCCGCUGGcG-GCCGag-AGC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 34460 | 0.69 | 0.416013 |
Target: 5'- uGGUCGCGGGgGGCguuCGCgGGCgugugCGg -3' miRNA: 3'- gCCAGCGCCCgCUG---GCGgCCGaga--GC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 64443 | 0.7 | 0.368834 |
Target: 5'- -cGUCGaagaaGGGC-ACCaGCUGGCUCUCGu -3' miRNA: 3'- gcCAGCg----CCCGcUGG-CGGCCGAGAGC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 17078 | 0.7 | 0.375673 |
Target: 5'- aGcUgGCGGGCGACCGCCgugaccugcgcgaGGCUCagGg -3' miRNA: 3'- gCcAgCGCCCGCUGGCGG-------------CCGAGagC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 64938 | 0.7 | 0.376439 |
Target: 5'- gCGGggaCGgGGGgGcucGCCGCCGGCggcCUCGu -3' miRNA: 3'- -GCCa--GCgCCCgC---UGGCGGCCGa--GAGC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 131060 | 0.7 | 0.376439 |
Target: 5'- aGGUCccgGCGGGCGccGCCGCCGuGCcCgccgCGg -3' miRNA: 3'- gCCAG---CGCCCGC--UGGCGGC-CGaGa---GC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 36139 | 0.7 | 0.368834 |
Target: 5'- gGGUCGagcCGGGC--CCGCCGGCguUCUCc -3' miRNA: 3'- gCCAGC---GCCCGcuGGCGGCCG--AGAGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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