miRNA display CGI


Results 41 - 60 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31026 3' -64.2 NC_006560.1 + 45882 0.71 0.328225
Target:  5'- aGGUCcacccugagcucaccGgGGGCGACCGgCGGgUCUCc -3'
miRNA:   3'- gCCAG---------------CgCCCGCUGGCgGCCgAGAGc -5'
31026 3' -64.2 NC_006560.1 + 57333 0.71 0.331713
Target:  5'- gCGGUgCGCGGGgcaGGCCGCggcgaagCGGC-CUCGg -3'
miRNA:   3'- -GCCA-GCGCCCg--CUGGCG-------GCCGaGAGC- -5'
31026 3' -64.2 NC_006560.1 + 3376 0.71 0.332414
Target:  5'- gCGGgcggGCGGGCGGgCgcggGCCGGCUCUUc -3'
miRNA:   3'- -GCCag--CGCCCGCUgG----CGGCCGAGAGc -5'
31026 3' -64.2 NC_006560.1 + 39592 0.7 0.339482
Target:  5'- uCGGUgGCGGGCG--CGCCGGCcCgCGg -3'
miRNA:   3'- -GCCAgCGCCCGCugGCGGCCGaGaGC- -5'
31026 3' -64.2 NC_006560.1 + 42221 0.7 0.339482
Target:  5'- gGGUCGCGcgcGGCGACCcgggggcgGCaCGcGCUCUUGa -3'
miRNA:   3'- gCCAGCGC---CCGCUGG--------CG-GC-CGAGAGC- -5'
31026 3' -64.2 NC_006560.1 + 78067 0.7 0.339482
Target:  5'- gCGGcCgGCGGcGCGGCCG-CGGCgCUCGg -3'
miRNA:   3'- -GCCaG-CGCC-CGCUGGCgGCCGaGAGC- -5'
31026 3' -64.2 NC_006560.1 + 45728 0.7 0.346659
Target:  5'- gCGG-CGCaGGCGcGCCGCgGGCUCgCGc -3'
miRNA:   3'- -GCCaGCGcCCGC-UGGCGgCCGAGaGC- -5'
31026 3' -64.2 NC_006560.1 + 33480 0.7 0.353943
Target:  5'- aGG-CgGCGGGgGGCCGCCGGCa---- -3'
miRNA:   3'- gCCaG-CGCCCgCUGGCGGCCGagagc -5'
31026 3' -64.2 NC_006560.1 + 3430 0.7 0.361335
Target:  5'- gCGGgCGCGGGCGcCCGCgGgggcgaggaGCUCUUGc -3'
miRNA:   3'- -GCCaGCGCCCGCuGGCGgC---------CGAGAGC- -5'
31026 3' -64.2 NC_006560.1 + 142545 0.7 0.361335
Target:  5'- cCGG-CGgcCGGGCGcgucggacgcggGCCGCCGGcCUCUCc -3'
miRNA:   3'- -GCCaGC--GCCCGC------------UGGCGGCC-GAGAGc -5'
31026 3' -64.2 NC_006560.1 + 134456 0.7 0.361335
Target:  5'- aCGG-CGCGGGCGGCCcccGCgGGCcCgCGg -3'
miRNA:   3'- -GCCaGCGCCCGCUGG---CGgCCGaGaGC- -5'
31026 3' -64.2 NC_006560.1 + 5671 0.7 0.368834
Target:  5'- cCGGggcgCGgGGGCGGCCGgCGGCgccgCccgUCGa -3'
miRNA:   3'- -GCCa---GCgCCCGCUGGCgGCCGa---G---AGC- -5'
31026 3' -64.2 NC_006560.1 + 64443 0.7 0.368834
Target:  5'- -cGUCGaagaaGGGC-ACCaGCUGGCUCUCGu -3'
miRNA:   3'- gcCAGCg----CCCGcUGG-CGGCCGAGAGC- -5'
31026 3' -64.2 NC_006560.1 + 36139 0.7 0.368834
Target:  5'- gGGUCGagcCGGGC--CCGCCGGCguUCUCc -3'
miRNA:   3'- gCCAGC---GCCCGcuGGCGGCCG--AGAGc -5'
31026 3' -64.2 NC_006560.1 + 125042 0.7 0.368834
Target:  5'- uGGUgGCGcGGCGGUCGCCGGCggaCUUc -3'
miRNA:   3'- gCCAgCGC-CCGCUGGCGGCCGa--GAGc -5'
31026 3' -64.2 NC_006560.1 + 32741 0.7 0.368834
Target:  5'- gGGggGCGGGgccCGGCgCGCCGGCcggggUCUCGg -3'
miRNA:   3'- gCCagCGCCC---GCUG-GCGGCCG-----AGAGC- -5'
31026 3' -64.2 NC_006560.1 + 17078 0.7 0.375673
Target:  5'- aGcUgGCGGGCGACCGCCgugaccugcgcgaGGCUCagGg -3'
miRNA:   3'- gCcAgCGCCCGCUGGCGG-------------CCGAGagC- -5'
31026 3' -64.2 NC_006560.1 + 64938 0.7 0.376439
Target:  5'- gCGGggaCGgGGGgGcucGCCGCCGGCggcCUCGu -3'
miRNA:   3'- -GCCa--GCgCCCgC---UGGCGGCCGa--GAGC- -5'
31026 3' -64.2 NC_006560.1 + 131060 0.7 0.376439
Target:  5'- aGGUCccgGCGGGCGccGCCGCCGuGCcCgccgCGg -3'
miRNA:   3'- gCCAG---CGCCCGC--UGGCGGC-CGaGa---GC- -5'
31026 3' -64.2 NC_006560.1 + 31509 0.7 0.376439
Target:  5'- -cGUCaCGGGCGACUgccuGCCGGUcCUCGa -3'
miRNA:   3'- gcCAGcGCCCGCUGG----CGGCCGaGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.