miRNA display CGI


Results 61 - 80 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31026 3' -64.2 NC_006560.1 + 77114 0.69 0.381824
Target:  5'- aGGggCGCGGGCgGGCCGCCGccgcccgcgccccuGCUCg-- -3'
miRNA:   3'- gCCa-GCGCCCG-CUGGCGGC--------------CGAGagc -5'
31026 3' -64.2 NC_006560.1 + 137244 0.69 0.384148
Target:  5'- uGGgggCGCGGGCGGCgggcgaCGCCGaGUUCcCGg -3'
miRNA:   3'- gCCa--GCGCCCGCUG------GCGGC-CGAGaGC- -5'
31026 3' -64.2 NC_006560.1 + 131883 0.69 0.391962
Target:  5'- gCGGUCGCGGcguacGCGGagggCGCCGGCg--CGg -3'
miRNA:   3'- -GCCAGCGCC-----CGCUg---GCGGCCGagaGC- -5'
31026 3' -64.2 NC_006560.1 + 85911 0.69 0.391962
Target:  5'- gCGGUCGCGcggccagcgcGGCGGCCGCCGccgagaccGCgUCgUCGu -3'
miRNA:   3'- -GCCAGCGC----------CCGCUGGCGGC--------CG-AG-AGC- -5'
31026 3' -64.2 NC_006560.1 + 37535 0.69 0.391962
Target:  5'- uCGGccgCGCGGGCGGCCauGCC-GCUCg-- -3'
miRNA:   3'- -GCCa--GCGCCCGCUGG--CGGcCGAGagc -5'
31026 3' -64.2 NC_006560.1 + 4048 0.69 0.391962
Target:  5'- gCGG-CGCGGcGcCGGCCGCggCGGCguUCUCGc -3'
miRNA:   3'- -GCCaGCGCC-C-GCUGGCG--GCCG--AGAGC- -5'
31026 3' -64.2 NC_006560.1 + 114363 0.69 0.391962
Target:  5'- gCGcGUaCGCGGGCGACCGCgagGGCgacgCGa -3'
miRNA:   3'- -GC-CA-GCGCCCGCUGGCGg--CCGaga-GC- -5'
31026 3' -64.2 NC_006560.1 + 55261 0.69 0.399878
Target:  5'- gCGGcCGCGGaccccGCGGCgaCGCCGGCccaCUCGa -3'
miRNA:   3'- -GCCaGCGCC-----CGCUG--GCGGCCGa--GAGC- -5'
31026 3' -64.2 NC_006560.1 + 74107 0.69 0.399878
Target:  5'- gGcGUCGCuGGGCGacGCCGCgGGCcaggggCUCGu -3'
miRNA:   3'- gC-CAGCG-CCCGC--UGGCGgCCGa-----GAGC- -5'
31026 3' -64.2 NC_006560.1 + 3327 0.69 0.407896
Target:  5'- cCGGgggCGCGGGCGGgcggCGUCGGCg-UCGg -3'
miRNA:   3'- -GCCa--GCGCCCGCUg---GCGGCCGagAGC- -5'
31026 3' -64.2 NC_006560.1 + 75095 0.69 0.416013
Target:  5'- aCGccCGCaGGGCGAUCGCgCGGCUCg-- -3'
miRNA:   3'- -GCcaGCG-CCCGCUGGCG-GCCGAGagc -5'
31026 3' -64.2 NC_006560.1 + 51729 0.69 0.416013
Target:  5'- uGGgccgacgCGCGGGCGGCCuCgCGGCgcaUCGa -3'
miRNA:   3'- gCCa------GCGCCCGCUGGcG-GCCGag-AGC- -5'
31026 3' -64.2 NC_006560.1 + 34460 0.69 0.416013
Target:  5'- uGGUCGCGGGgGGCguuCGCgGGCgugugCGg -3'
miRNA:   3'- gCCAGCGCCCgCUG---GCGgCCGaga--GC- -5'
31026 3' -64.2 NC_006560.1 + 65493 0.69 0.421754
Target:  5'- uCGGcguugCGCGGGCGGuaacccagaacuuuCCGgccagaaaCGGCUCUCGa -3'
miRNA:   3'- -GCCa----GCGCCCGCU--------------GGCg-------GCCGAGAGC- -5'
31026 3' -64.2 NC_006560.1 + 31142 0.69 0.424229
Target:  5'- cCGGcUCGCGGG-GACCcaaGCgGGC-CUCGc -3'
miRNA:   3'- -GCC-AGCGCCCgCUGG---CGgCCGaGAGC- -5'
31026 3' -64.2 NC_006560.1 + 99884 0.69 0.432541
Target:  5'- gGGUCguggcggcgGCGGGCGGCgcgggguucaUGUCGGC-CUCGg -3'
miRNA:   3'- gCCAG---------CGCCCGCUG----------GCGGCCGaGAGC- -5'
31026 3' -64.2 NC_006560.1 + 610 0.69 0.432541
Target:  5'- gCGGgcaCGCGGGUucgaAUCGCaaGGCUCUCGg -3'
miRNA:   3'- -GCCa--GCGCCCGc---UGGCGg-CCGAGAGC- -5'
31026 3' -64.2 NC_006560.1 + 72364 0.69 0.432541
Target:  5'- gCGGcccUCGCGGGgGcGCCGCUGGCgCUg- -3'
miRNA:   3'- -GCC---AGCGCCCgC-UGGCGGCCGaGAgc -5'
31026 3' -64.2 NC_006560.1 + 18487 0.68 0.440947
Target:  5'- aGGUCGCGGacGCcGCCGCCuGCUUcCGc -3'
miRNA:   3'- gCCAGCGCC--CGcUGGCGGcCGAGaGC- -5'
31026 3' -64.2 NC_006560.1 + 7642 0.68 0.440947
Target:  5'- cCGGcCGUcgGGGCGACCGUCGcccCUCUgGg -3'
miRNA:   3'- -GCCaGCG--CCCGCUGGCGGCc--GAGAgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.