miRNA display CGI


Results 81 - 100 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31026 3' -64.2 NC_006560.1 + 102868 0.68 0.444335
Target:  5'- cCGGgCGCGcGGCGGggugguuaaaacggcCCGCgUGGCUCUCc -3'
miRNA:   3'- -GCCaGCGC-CCGCU---------------GGCG-GCCGAGAGc -5'
31026 3' -64.2 NC_006560.1 + 51201 0.68 0.449445
Target:  5'- gCGGugcUCGCGGaGCaGACCGUCcaguGGCUgUCGg -3'
miRNA:   3'- -GCC---AGCGCC-CG-CUGGCGG----CCGAgAGC- -5'
31026 3' -64.2 NC_006560.1 + 133961 0.68 0.449445
Target:  5'- gGGUCGuCGGG-GGCCGCggcgccccccccCGGCUCgCGc -3'
miRNA:   3'- gCCAGC-GCCCgCUGGCG------------GCCGAGaGC- -5'
31026 3' -64.2 NC_006560.1 + 75347 0.68 0.449445
Target:  5'- uGGUCG-GGGCGACgCGgCGGCgcgC-CGa -3'
miRNA:   3'- gCCAGCgCCCGCUG-GCgGCCGa--GaGC- -5'
31026 3' -64.2 NC_006560.1 + 69581 0.68 0.458033
Target:  5'- uCGG-CGCGGGcCGGCCcaGCCcGCUC-CGg -3'
miRNA:   3'- -GCCaGCGCCC-GCUGG--CGGcCGAGaGC- -5'
31026 3' -64.2 NC_006560.1 + 51975 0.68 0.458033
Target:  5'- cCGGgcgGCGGGCGGCgggccUGCCGGCg--CGg -3'
miRNA:   3'- -GCCag-CGCCCGCUG-----GCGGCCGagaGC- -5'
31026 3' -64.2 NC_006560.1 + 33298 0.68 0.458033
Target:  5'- gGGUCGCggaggcccGGGgGGcCCGCCGGCcCgCGg -3'
miRNA:   3'- gCCAGCG--------CCCgCU-GGCGGCCGaGaGC- -5'
31026 3' -64.2 NC_006560.1 + 135078 0.68 0.464096
Target:  5'- gGcGUCGgGGGCG-CCGCCguaccggcgcaccaGGCgCUCGg -3'
miRNA:   3'- gC-CAGCgCCCGCuGGCGG--------------CCGaGAGC- -5'
31026 3' -64.2 NC_006560.1 + 3752 0.68 0.465836
Target:  5'- gCGG-CGCGGGCGcggcggcGCCGCgCGGCgggaccgCGg -3'
miRNA:   3'- -GCCaGCGCCCGC-------UGGCG-GCCGaga----GC- -5'
31026 3' -64.2 NC_006560.1 + 15136 0.68 0.466707
Target:  5'- uGGUCGCGGGCucugGGCCccccgcccCCGGCgUCUUc -3'
miRNA:   3'- gCCAGCGCCCG----CUGGc-------GGCCG-AGAGc -5'
31026 3' -64.2 NC_006560.1 + 118243 0.68 0.466707
Target:  5'- cCGGUccgCGCGGGCgcgGACCGCCGcGC-CgcccCGg -3'
miRNA:   3'- -GCCA---GCGCCCG---CUGGCGGC-CGaGa---GC- -5'
31026 3' -64.2 NC_006560.1 + 84696 0.68 0.475466
Target:  5'- gCGG-CGCGGGCGACgGgC-GC-CUCGg -3'
miRNA:   3'- -GCCaGCGCCCGCUGgCgGcCGaGAGC- -5'
31026 3' -64.2 NC_006560.1 + 517 0.68 0.475466
Target:  5'- aCGGgCGCcgggGGGCGGCgGCCGGC-CgCGc -3'
miRNA:   3'- -GCCaGCG----CCCGCUGgCGGCCGaGaGC- -5'
31026 3' -64.2 NC_006560.1 + 55324 0.68 0.481645
Target:  5'- gGGUCGCGgggcgggggcucguGGCGGCCGUgGuGCUC-Ca -3'
miRNA:   3'- gCCAGCGC--------------CCGCUGGCGgC-CGAGaGc -5'
31026 3' -64.2 NC_006560.1 + 33406 0.68 0.484306
Target:  5'- gGGgggCGCGGGCGGggagCGCCGGCg---- -3'
miRNA:   3'- gCCa--GCGCCCGCUg---GCGGCCGagagc -5'
31026 3' -64.2 NC_006560.1 + 34604 0.68 0.484306
Target:  5'- gGGcUCcgGgGGGUGGCCGCgCGGCUCg-- -3'
miRNA:   3'- gCC-AG--CgCCCGCUGGCG-GCCGAGagc -5'
31026 3' -64.2 NC_006560.1 + 23388 0.68 0.487864
Target:  5'- aCGGcgcCGCGGGCGucgucgccgcgcagcGCCGCCuGGCggccgccCUCGc -3'
miRNA:   3'- -GCCa--GCGCCCGC---------------UGGCGG-CCGa------GAGC- -5'
31026 3' -64.2 NC_006560.1 + 43263 0.67 0.49054
Target:  5'- gCGGUCGUGcGCGAUgaacuccuucagggCGCCGG-UCUCGc -3'
miRNA:   3'- -GCCAGCGCcCGCUG--------------GCGGCCgAGAGC- -5'
31026 3' -64.2 NC_006560.1 + 85506 0.67 0.493223
Target:  5'- gGGUCGcCGGGCuGCUGCCcgcgggGGCgCUUGg -3'
miRNA:   3'- gCCAGC-GCCCGcUGGCGG------CCGaGAGC- -5'
31026 3' -64.2 NC_006560.1 + 45776 0.67 0.493223
Target:  5'- gGGgggCGCGGGCucgguCCGCCGGggcCUUUUGg -3'
miRNA:   3'- gCCa--GCGCCCGcu---GGCGGCC---GAGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.