Results 101 - 120 of 155 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31026 | 3' | -64.2 | NC_006560.1 | + | 45776 | 0.67 | 0.493223 |
Target: 5'- gGGgggCGCGGGCucgguCCGCCGGggcCUUUUGg -3' miRNA: 3'- gCCa--GCGCCCGcu---GGCGGCC---GAGAGC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 12523 | 0.67 | 0.496812 |
Target: 5'- gCGGUCGCcgggucaguaGGGCGugUcCCGGCgccgcgccgucggggUCUCGu -3' miRNA: 3'- -GCCAGCG----------CCCGCugGcGGCCG---------------AGAGC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 127155 | 0.67 | 0.49951 |
Target: 5'- gGGUCGCGgcgucgagcucggcGGCGucCUGCCGGCgg-CGg -3' miRNA: 3'- gCCAGCGC--------------CCGCu-GGCGGCCGagaGC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 66010 | 0.67 | 0.502216 |
Target: 5'- gGGgacCGCGGGuCGGCCGCCagGGC-CgCGa -3' miRNA: 3'- gCCa--GCGCCC-GCUGGCGG--CCGaGaGC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 41298 | 0.67 | 0.502216 |
Target: 5'- gCGGUCGCGcGGCuGCC-CCGGCcgugUCUg- -3' miRNA: 3'- -GCCAGCGC-CCGcUGGcGGCCG----AGAgc -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 133530 | 0.67 | 0.502216 |
Target: 5'- gCGGcuUCGUGGGCGgggaGCCGgCGGCgcgCGg -3' miRNA: 3'- -GCC--AGCGCCCGC----UGGCgGCCGagaGC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 3050 | 0.67 | 0.508553 |
Target: 5'- aGG-CGCGGagcggcccgagggcGCGGCCGgagcCCGGCUCgggCGg -3' miRNA: 3'- gCCaGCGCC--------------CGCUGGC----GGCCGAGa--GC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 126372 | 0.67 | 0.511279 |
Target: 5'- aCGGgcucgaCGgGGGCG-CCGCCcGGgUCUCc -3' miRNA: 3'- -GCCa-----GCgCCCGCuGGCGG-CCgAGAGc -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 147063 | 0.67 | 0.511279 |
Target: 5'- gGGagGCGGGCGGCgaGUCGGCgaUCa -3' miRNA: 3'- gCCagCGCCCGCUGg-CGGCCGagAGc -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 71954 | 0.67 | 0.511279 |
Target: 5'- aCGGcCuGCGGGagGGCuCGCCGGCcUUCGu -3' miRNA: 3'- -GCCaG-CGCCCg-CUG-GCGGCCGaGAGC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 81469 | 0.67 | 0.520409 |
Target: 5'- cCGGgagagCGgGGGgGAgCGCCGGCcccgcggcCUCGa -3' miRNA: 3'- -GCCa----GCgCCCgCUgGCGGCCGa-------GAGC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 148628 | 0.67 | 0.520409 |
Target: 5'- gCGGUCcccgaCGGGCGGgccCCGCCGGC-Cg-- -3' miRNA: 3'- -GCCAGc----GCCCGCU---GGCGGCCGaGagc -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 88561 | 0.67 | 0.528681 |
Target: 5'- gCGGggCGCGccugaGGCGGCCGUCGuGCacgccgacgcgcaUCUCGg -3' miRNA: 3'- -GCCa-GCGC-----CCGCUGGCGGC-CG-------------AGAGC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 33828 | 0.67 | 0.529603 |
Target: 5'- gGGUCgGCGGGgguCGGCCGCgGGCg--UGg -3' miRNA: 3'- gCCAG-CGCCC---GCUGGCGgCCGagaGC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 121927 | 0.67 | 0.529603 |
Target: 5'- gCGGgauggacCGCGGGCccGGgCGCgCGGCUCUgCGc -3' miRNA: 3'- -GCCa------GCGCCCG--CUgGCG-GCCGAGA-GC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 33109 | 0.67 | 0.538856 |
Target: 5'- gGGUCGCGgggaaGGCGGCCGCgGGgaaggCGg -3' miRNA: 3'- gCCAGCGC-----CCGCUGGCGgCCgaga-GC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 34364 | 0.67 | 0.538856 |
Target: 5'- aGGagGgGGGCGcCCGCC-GC-CUCGg -3' miRNA: 3'- gCCagCgCCCGCuGGCGGcCGaGAGC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 118535 | 0.67 | 0.538856 |
Target: 5'- uGGcCGgGGGgGACCGCCccggcuGGCUguggagccggcgCUCGg -3' miRNA: 3'- gCCaGCgCCCgCUGGCGG------CCGA------------GAGC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 65955 | 0.67 | 0.538856 |
Target: 5'- gCGGUacagGCGGGCGGCgCGgugCGGCgcCUCGa -3' miRNA: 3'- -GCCAg---CGCCCGCUG-GCg--GCCGa-GAGC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 21762 | 0.66 | 0.54723 |
Target: 5'- gGGUauaugagGCGGGCGGCCGUgcgaucguguagaCGGCagUCGc -3' miRNA: 3'- gCCAg------CGCCCGCUGGCG-------------GCCGagAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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