Results 61 - 80 of 155 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
31026 | 3' | -64.2 | NC_006560.1 | + | 34604 | 0.68 | 0.484306 |
Target: 5'- gGGcUCcgGgGGGUGGCCGCgCGGCUCg-- -3' miRNA: 3'- gCC-AG--CgCCCGCUGGCG-GCCGAGagc -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 55324 | 0.68 | 0.481645 |
Target: 5'- gGGUCGCGgggcgggggcucguGGCGGCCGUgGuGCUC-Ca -3' miRNA: 3'- gCCAGCGC--------------CCGCUGGCGgC-CGAGaGc -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 517 | 0.68 | 0.475466 |
Target: 5'- aCGGgCGCcgggGGGCGGCgGCCGGC-CgCGc -3' miRNA: 3'- -GCCaGCG----CCCGCUGgCGGCCGaGaGC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 84696 | 0.68 | 0.475466 |
Target: 5'- gCGG-CGCGGGCGACgGgC-GC-CUCGg -3' miRNA: 3'- -GCCaGCGCCCGCUGgCgGcCGaGAGC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 118243 | 0.68 | 0.466707 |
Target: 5'- cCGGUccgCGCGGGCgcgGACCGCCGcGC-CgcccCGg -3' miRNA: 3'- -GCCA---GCGCCCG---CUGGCGGC-CGaGa---GC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 15136 | 0.68 | 0.466707 |
Target: 5'- uGGUCGCGGGCucugGGCCccccgcccCCGGCgUCUUc -3' miRNA: 3'- gCCAGCGCCCG----CUGGc-------GGCCG-AGAGc -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 3752 | 0.68 | 0.465836 |
Target: 5'- gCGG-CGCGGGCGcggcggcGCCGCgCGGCgggaccgCGg -3' miRNA: 3'- -GCCaGCGCCCGC-------UGGCG-GCCGaga----GC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 135078 | 0.68 | 0.464096 |
Target: 5'- gGcGUCGgGGGCG-CCGCCguaccggcgcaccaGGCgCUCGg -3' miRNA: 3'- gC-CAGCgCCCGCuGGCGG--------------CCGaGAGC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 69581 | 0.68 | 0.458033 |
Target: 5'- uCGG-CGCGGGcCGGCCcaGCCcGCUC-CGg -3' miRNA: 3'- -GCCaGCGCCC-GCUGG--CGGcCGAGaGC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 51975 | 0.68 | 0.458033 |
Target: 5'- cCGGgcgGCGGGCGGCgggccUGCCGGCg--CGg -3' miRNA: 3'- -GCCag-CGCCCGCUG-----GCGGCCGagaGC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 33298 | 0.68 | 0.458033 |
Target: 5'- gGGUCGCggaggcccGGGgGGcCCGCCGGCcCgCGg -3' miRNA: 3'- gCCAGCG--------CCCgCU-GGCGGCCGaGaGC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 133961 | 0.68 | 0.449445 |
Target: 5'- gGGUCGuCGGG-GGCCGCggcgccccccccCGGCUCgCGc -3' miRNA: 3'- gCCAGC-GCCCgCUGGCG------------GCCGAGaGC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 75347 | 0.68 | 0.449445 |
Target: 5'- uGGUCG-GGGCGACgCGgCGGCgcgC-CGa -3' miRNA: 3'- gCCAGCgCCCGCUG-GCgGCCGa--GaGC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 51201 | 0.68 | 0.449445 |
Target: 5'- gCGGugcUCGCGGaGCaGACCGUCcaguGGCUgUCGg -3' miRNA: 3'- -GCC---AGCGCC-CG-CUGGCGG----CCGAgAGC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 102868 | 0.68 | 0.444335 |
Target: 5'- cCGGgCGCGcGGCGGggugguuaaaacggcCCGCgUGGCUCUCc -3' miRNA: 3'- -GCCaGCGC-CCGCU---------------GGCG-GCCGAGAGc -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 7642 | 0.68 | 0.440947 |
Target: 5'- cCGGcCGUcgGGGCGACCGUCGcccCUCUgGg -3' miRNA: 3'- -GCCaGCG--CCCGCUGGCGGCc--GAGAgC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 18487 | 0.68 | 0.440947 |
Target: 5'- aGGUCGCGGacGCcGCCGCCuGCUUcCGc -3' miRNA: 3'- gCCAGCGCC--CGcUGGCGGcCGAGaGC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 72364 | 0.69 | 0.432541 |
Target: 5'- gCGGcccUCGCGGGgGcGCCGCUGGCgCUg- -3' miRNA: 3'- -GCC---AGCGCCCgC-UGGCGGCCGaGAgc -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 610 | 0.69 | 0.432541 |
Target: 5'- gCGGgcaCGCGGGUucgaAUCGCaaGGCUCUCGg -3' miRNA: 3'- -GCCa--GCGCCCGc---UGGCGg-CCGAGAGC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 99884 | 0.69 | 0.432541 |
Target: 5'- gGGUCguggcggcgGCGGGCGGCgcgggguucaUGUCGGC-CUCGg -3' miRNA: 3'- gCCAG---------CGCCCGCUG----------GCGGCCGaGAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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