miRNA display CGI


Results 41 - 60 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31026 3' -64.2 NC_006560.1 + 31509 0.7 0.376439
Target:  5'- -cGUCaCGGGCGACUgccuGCCGGUcCUCGa -3'
miRNA:   3'- gcCAGcGCCCGCUGG----CGGCCGaGAGC- -5'
31026 3' -64.2 NC_006560.1 + 32741 0.7 0.368834
Target:  5'- gGGggGCGGGgccCGGCgCGCCGGCcggggUCUCGg -3'
miRNA:   3'- gCCagCGCCC---GCUG-GCGGCCG-----AGAGC- -5'
31026 3' -64.2 NC_006560.1 + 33109 0.67 0.538856
Target:  5'- gGGUCGCGgggaaGGCGGCCGCgGGgaaggCGg -3'
miRNA:   3'- gCCAGCGC-----CCGCUGGCGgCCgaga-GC- -5'
31026 3' -64.2 NC_006560.1 + 33298 0.68 0.458033
Target:  5'- gGGUCGCggaggcccGGGgGGcCCGCCGGCcCgCGg -3'
miRNA:   3'- gCCAGCG--------CCCgCU-GGCGGCCGaGaGC- -5'
31026 3' -64.2 NC_006560.1 + 33406 0.68 0.484306
Target:  5'- gGGgggCGCGGGCGGggagCGCCGGCg---- -3'
miRNA:   3'- gCCa--GCGCCCGCUg---GCGGCCGagagc -5'
31026 3' -64.2 NC_006560.1 + 33480 0.7 0.353943
Target:  5'- aGG-CgGCGGGgGGCCGCCGGCa---- -3'
miRNA:   3'- gCCaG-CGCCCgCUGGCGGCCGagagc -5'
31026 3' -64.2 NC_006560.1 + 33638 0.71 0.325455
Target:  5'- gCGGggggCGCcggGGGCGGCCGCgGGCcgCUUa -3'
miRNA:   3'- -GCCa---GCG---CCCGCUGGCGgCCGa-GAGc -5'
31026 3' -64.2 NC_006560.1 + 33828 0.67 0.529603
Target:  5'- gGGUCgGCGGGgguCGGCCGCgGGCg--UGg -3'
miRNA:   3'- gCCAG-CGCCC---GCUGGCGgCCGagaGC- -5'
31026 3' -64.2 NC_006560.1 + 34364 0.67 0.538856
Target:  5'- aGGagGgGGGCGcCCGCC-GC-CUCGg -3'
miRNA:   3'- gCCagCgCCCGCuGGCGGcCGaGAGC- -5'
31026 3' -64.2 NC_006560.1 + 34460 0.69 0.416013
Target:  5'- uGGUCGCGGGgGGCguuCGCgGGCgugugCGg -3'
miRNA:   3'- gCCAGCGCCCgCUG---GCGgCCGaga--GC- -5'
31026 3' -64.2 NC_006560.1 + 34604 0.68 0.484306
Target:  5'- gGGcUCcgGgGGGUGGCCGCgCGGCUCg-- -3'
miRNA:   3'- gCC-AG--CgCCCGCUGGCG-GCCGAGagc -5'
31026 3' -64.2 NC_006560.1 + 34672 0.74 0.212091
Target:  5'- gGGUCGCGGG-GAggaaccuaccugucCCGCCGGgCgUCUCGg -3'
miRNA:   3'- gCCAGCGCCCgCU--------------GGCGGCC-G-AGAGC- -5'
31026 3' -64.2 NC_006560.1 + 35804 0.66 0.548163
Target:  5'- gCGGUCGCccccGGGuUGAUUGUuaUGGCUCUCc -3'
miRNA:   3'- -GCCAGCG----CCC-GCUGGCG--GCCGAGAGc -5'
31026 3' -64.2 NC_006560.1 + 36139 0.7 0.368834
Target:  5'- gGGUCGagcCGGGC--CCGCCGGCguUCUCc -3'
miRNA:   3'- gCCAGC---GCCCGcuGGCGGCCG--AGAGc -5'
31026 3' -64.2 NC_006560.1 + 37535 0.69 0.391962
Target:  5'- uCGGccgCGCGGGCGGCCauGCC-GCUCg-- -3'
miRNA:   3'- -GCCa--GCGCCCGCUGG--CGGcCGAGagc -5'
31026 3' -64.2 NC_006560.1 + 39454 0.66 0.55752
Target:  5'- aCGGcgcugCGCGGucgGCG-CCGCCGGCg--CGg -3'
miRNA:   3'- -GCCa----GCGCC---CGCuGGCGGCCGagaGC- -5'
31026 3' -64.2 NC_006560.1 + 39592 0.7 0.339482
Target:  5'- uCGGUgGCGGGCG--CGCCGGCcCgCGg -3'
miRNA:   3'- -GCCAgCGCCCGCugGCGGCCGaGaGC- -5'
31026 3' -64.2 NC_006560.1 + 39966 0.73 0.239357
Target:  5'- gCGG-CGCGGGCGGCUGCgUGuGCUCgccgCGa -3'
miRNA:   3'- -GCCaGCGCCCGCUGGCG-GC-CGAGa---GC- -5'
31026 3' -64.2 NC_006560.1 + 41298 0.67 0.502216
Target:  5'- gCGGUCGCGcGGCuGCC-CCGGCcgugUCUg- -3'
miRNA:   3'- -GCCAGCGC-CCGcUGGcGGCCG----AGAgc -5'
31026 3' -64.2 NC_006560.1 + 42221 0.7 0.339482
Target:  5'- gGGUCGCGcgcGGCGACCcgggggcgGCaCGcGCUCUUGa -3'
miRNA:   3'- gCCAGCGC---CCGCUGG--------CG-GC-CGAGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.