Results 61 - 80 of 155 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31026 | 3' | -64.2 | NC_006560.1 | + | 43263 | 0.67 | 0.49054 |
Target: 5'- gCGGUCGUGcGCGAUgaacuccuucagggCGCCGG-UCUCGc -3' miRNA: 3'- -GCCAGCGCcCGCUG--------------GCGGCCgAGAGC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 43850 | 0.72 | 0.285983 |
Target: 5'- gGGU-GCGGGCGACgugCGCCGGCgccagCGg -3' miRNA: 3'- gCCAgCGCCCGCUG---GCGGCCGaga--GC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 45728 | 0.7 | 0.346659 |
Target: 5'- gCGG-CGCaGGCGcGCCGCgGGCUCgCGc -3' miRNA: 3'- -GCCaGCGcCCGC-UGGCGgCCGAGaGC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 45776 | 0.67 | 0.493223 |
Target: 5'- gGGgggCGCGGGCucgguCCGCCGGggcCUUUUGg -3' miRNA: 3'- gCCa--GCGCCCGcu---GGCGGCC---GAGAGC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 45882 | 0.71 | 0.328225 |
Target: 5'- aGGUCcacccugagcucaccGgGGGCGACCGgCGGgUCUCc -3' miRNA: 3'- gCCAG---------------CgCCCGCUGGCgGCCgAGAGc -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 51201 | 0.68 | 0.449445 |
Target: 5'- gCGGugcUCGCGGaGCaGACCGUCcaguGGCUgUCGg -3' miRNA: 3'- -GCC---AGCGCC-CG-CUGGCGG----CCGAgAGC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 51729 | 0.69 | 0.416013 |
Target: 5'- uGGgccgacgCGCGGGCGGCCuCgCGGCgcaUCGa -3' miRNA: 3'- gCCa------GCGCCCGCUGGcG-GCCGag-AGC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 51975 | 0.68 | 0.458033 |
Target: 5'- cCGGgcgGCGGGCGGCgggccUGCCGGCg--CGg -3' miRNA: 3'- -GCCag-CGCCCGCUG-----GCGGCCGagaGC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 54663 | 0.77 | 0.129598 |
Target: 5'- gGGUCGCGGGgGcgcggcaGCCGCCGGCcgcgccCUCGu -3' miRNA: 3'- gCCAGCGCCCgC-------UGGCGGCCGa-----GAGC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 55261 | 0.69 | 0.399878 |
Target: 5'- gCGGcCGCGGaccccGCGGCgaCGCCGGCccaCUCGa -3' miRNA: 3'- -GCCaGCGCC-----CGCUG--GCGGCCGa--GAGC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 55324 | 0.68 | 0.481645 |
Target: 5'- gGGUCGCGgggcgggggcucguGGCGGCCGUgGuGCUC-Ca -3' miRNA: 3'- gCCAGCGC--------------CCGCUGGCGgC-CGAGaGc -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 55372 | 0.72 | 0.256053 |
Target: 5'- aCGGUCGCGGGguagcCGACgaGCCGGCagguguaCUCGc -3' miRNA: 3'- -GCCAGCGCCC-----GCUGg-CGGCCGa------GAGC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 55690 | 0.73 | 0.244819 |
Target: 5'- aGGUUGCGGGCGGgCGCCaGGC-C-CGc -3' miRNA: 3'- gCCAGCGCCCGCUgGCGG-CCGaGaGC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 56129 | 0.66 | 0.599155 |
Target: 5'- cCGGUCGgGGGCGcuGucguagaccagccuuCCGCCGGC-CgggaCGg -3' miRNA: 3'- -GCCAGCgCCCGC--U---------------GGCGGCCGaGa---GC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 57333 | 0.71 | 0.331713 |
Target: 5'- gCGGUgCGCGGGgcaGGCCGCggcgaagCGGC-CUCGg -3' miRNA: 3'- -GCCA-GCGCCCg--CUGGCG-------GCCGaGAGC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 57398 | 0.71 | 0.30523 |
Target: 5'- gGGcCGCGGccagcGCGGCCGCCccGGCgacCUCGg -3' miRNA: 3'- gCCaGCGCC-----CGCUGGCGG--CCGa--GAGC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 58250 | 0.75 | 0.177267 |
Target: 5'- gGGcCGcCGaGGCGAgCCGCCGGC-CUCGg -3' miRNA: 3'- gCCaGC-GC-CCGCU-GGCGGCCGaGAGC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 62374 | 0.71 | 0.325455 |
Target: 5'- gGGUCGCGGG-GGgUGgCGGCUC-CGg -3' miRNA: 3'- gCCAGCGCCCgCUgGCgGCCGAGaGC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 64443 | 0.7 | 0.368834 |
Target: 5'- -cGUCGaagaaGGGC-ACCaGCUGGCUCUCGu -3' miRNA: 3'- gcCAGCg----CCCGcUGG-CGGCCGAGAGC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 64938 | 0.7 | 0.376439 |
Target: 5'- gCGGggaCGgGGGgGcucGCCGCCGGCggcCUCGu -3' miRNA: 3'- -GCCa--GCgCCCgC---UGGCGGCCGa--GAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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