Results 81 - 100 of 155 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31026 | 3' | -64.2 | NC_006560.1 | + | 65493 | 0.69 | 0.421754 |
Target: 5'- uCGGcguugCGCGGGCGGuaacccagaacuuuCCGgccagaaaCGGCUCUCGa -3' miRNA: 3'- -GCCa----GCGCCCGCU--------------GGCg-------GCCGAGAGC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 65955 | 0.67 | 0.538856 |
Target: 5'- gCGGUacagGCGGGCGGCgCGgugCGGCgcCUCGa -3' miRNA: 3'- -GCCAg---CGCCCGCUG-GCg--GCCGa-GAGC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 66010 | 0.67 | 0.502216 |
Target: 5'- gGGgacCGCGGGuCGGCCGCCagGGC-CgCGa -3' miRNA: 3'- gCCa--GCGCCC-GCUGGCGG--CCGaGaGC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 66153 | 0.66 | 0.595346 |
Target: 5'- ---cCGC-GGCGGCaGCUGGCUCUUGa -3' miRNA: 3'- gccaGCGcCCGCUGgCGGCCGAGAGC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 66328 | 0.66 | 0.595346 |
Target: 5'- gGGUUGCcGGUGugCGC-GGC-CUCGu -3' miRNA: 3'- gCCAGCGcCCGCugGCGgCCGaGAGC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 67550 | 0.66 | 0.58584 |
Target: 5'- uCGGUguCGGGgauCGACCGCCGGUccguUCUgGg -3' miRNA: 3'- -GCCAgcGCCC---GCUGGCGGCCG----AGAgC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 69275 | 0.75 | 0.181485 |
Target: 5'- uGGcCGCGGGCGGCgGCCccGGC-CUCa -3' miRNA: 3'- gCCaGCGCCCGCUGgCGG--CCGaGAGc -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 69581 | 0.68 | 0.458033 |
Target: 5'- uCGG-CGCGGGcCGGCCcaGCCcGCUC-CGg -3' miRNA: 3'- -GCCaGCGCCC-GCUGG--CGGcCGAGaGC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 71954 | 0.67 | 0.511279 |
Target: 5'- aCGGcCuGCGGGagGGCuCGCCGGCcUUCGu -3' miRNA: 3'- -GCCaG-CGCCCg-CUG-GCGGCCGaGAGC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 72086 | 0.66 | 0.58584 |
Target: 5'- gGGgccccgaGCcGGCGACCccgGCCGGC-CUCGc -3' miRNA: 3'- gCCag-----CGcCCGCUGG---CGGCCGaGAGC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 72364 | 0.69 | 0.432541 |
Target: 5'- gCGGcccUCGCGGGgGcGCCGCUGGCgCUg- -3' miRNA: 3'- -GCC---AGCGCCCgC-UGGCGGCCGaGAgc -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 74107 | 0.69 | 0.399878 |
Target: 5'- gGcGUCGCuGGGCGacGCCGCgGGCcaggggCUCGu -3' miRNA: 3'- gC-CAGCG-CCCGC--UGGCGgCCGa-----GAGC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 74941 | 0.73 | 0.250384 |
Target: 5'- aCGGUCGa-GGCGGCCGCCcgGGCccgcgacguUCUCGc -3' miRNA: 3'- -GCCAGCgcCCGCUGGCGG--CCG---------AGAGC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 75095 | 0.69 | 0.416013 |
Target: 5'- aCGccCGCaGGGCGAUCGCgCGGCUCg-- -3' miRNA: 3'- -GCcaGCG-CCCGCUGGCG-GCCGAGagc -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 75347 | 0.68 | 0.449445 |
Target: 5'- uGGUCG-GGGCGACgCGgCGGCgcgC-CGa -3' miRNA: 3'- gCCAGCgCCCGCUG-GCgGCCGa--GaGC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 77114 | 0.69 | 0.381824 |
Target: 5'- aGGggCGCGGGCgGGCCGCCGccgcccgcgccccuGCUCg-- -3' miRNA: 3'- gCCa-GCGCCCG-CUGGCGGC--------------CGAGagc -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 78067 | 0.7 | 0.339482 |
Target: 5'- gCGGcCgGCGGcGCGGCCG-CGGCgCUCGg -3' miRNA: 3'- -GCCaG-CGCC-CGCUGGCgGCCGaGAGC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 81066 | 0.66 | 0.604875 |
Target: 5'- uGGUCGUGGGUGugguCCaCgGGCUgcgcCUCGu -3' miRNA: 3'- gCCAGCGCCCGCu---GGcGgCCGA----GAGC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 81469 | 0.67 | 0.520409 |
Target: 5'- cCGGgagagCGgGGGgGAgCGCCGGCcccgcggcCUCGa -3' miRNA: 3'- -GCCa----GCgCCCgCUgGCGGCCGa-------GAGC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 83352 | 0.66 | 0.566921 |
Target: 5'- aGGgCGCGGGCGGCgGCCcggGGCcccagccCUCc -3' miRNA: 3'- gCCaGCGCCCGCUGgCGG---CCGa------GAGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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