miRNA display CGI


Results 41 - 60 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31026 3' -64.2 NC_006560.1 + 99884 0.69 0.432541
Target:  5'- gGGUCguggcggcgGCGGGCGGCgcgggguucaUGUCGGC-CUCGg -3'
miRNA:   3'- gCCAG---------CGCCCGCUG----------GCGGCCGaGAGC- -5'
31026 3' -64.2 NC_006560.1 + 99273 0.67 0.493223
Target:  5'- aCGGcUGCGGGUgGGCCGgCGGCUggggUCGg -3'
miRNA:   3'- -GCCaGCGCCCG-CUGGCgGCCGAg---AGC- -5'
31026 3' -64.2 NC_006560.1 + 99146 0.66 0.604875
Target:  5'- gGGUCGCcggccucgccggGGGCGGCCGUCccgGGCgccgCGc -3'
miRNA:   3'- gCCAGCG------------CCCGCUGGCGG---CCGaga-GC- -5'
31026 3' -64.2 NC_006560.1 + 98234 0.66 0.576363
Target:  5'- gGGcaUCGUGGGCGGggucgucuCCGCCG--UCUCGg -3'
miRNA:   3'- gCC--AGCGCCCGCU--------GGCGGCcgAGAGC- -5'
31026 3' -64.2 NC_006560.1 + 94450 0.66 0.58015
Target:  5'- gCGG-CGCGGGCGcGCgCGCUgcgcgugcuggaccaGGCcCUCGa -3'
miRNA:   3'- -GCCaGCGCCCGC-UG-GCGG---------------CCGaGAGC- -5'
31026 3' -64.2 NC_006560.1 + 90347 0.72 0.256053
Target:  5'- cCGucgCGCGGGCGGCCGCCcaccuGGCgUUCGa -3'
miRNA:   3'- -GCca-GCGCCCGCUGGCGG-----CCGaGAGC- -5'
31026 3' -64.2 NC_006560.1 + 90124 0.66 0.55752
Target:  5'- aCGGUCgGCGGGgacGCCGuCCGGCggaucccgCUCu -3'
miRNA:   3'- -GCCAG-CGCCCgc-UGGC-GGCCGa-------GAGc -5'
31026 3' -64.2 NC_006560.1 + 88561 0.67 0.528681
Target:  5'- gCGGggCGCGccugaGGCGGCCGUCGuGCacgccgacgcgcaUCUCGg -3'
miRNA:   3'- -GCCa-GCGC-----CCGCUGGCGGC-CG-------------AGAGC- -5'
31026 3' -64.2 NC_006560.1 + 88358 0.66 0.592491
Target:  5'- cCGGcCGUGGGCGcgccaggcacccCCGCCGuGCUgcgcgugCUCGa -3'
miRNA:   3'- -GCCaGCGCCCGCu-----------GGCGGC-CGA-------GAGC- -5'
31026 3' -64.2 NC_006560.1 + 88197 0.76 0.139344
Target:  5'- aGGUCGCGGGgGgcgcggcagcccaGCCGCCGGUcgacCUCGg -3'
miRNA:   3'- gCCAGCGCCCgC-------------UGGCGGCCGa---GAGC- -5'
31026 3' -64.2 NC_006560.1 + 85911 0.69 0.391962
Target:  5'- gCGGUCGCGcggccagcgcGGCGGCCGCCGccgagaccGCgUCgUCGu -3'
miRNA:   3'- -GCCAGCGC----------CCGCUGGCGGC--------CG-AG-AGC- -5'
31026 3' -64.2 NC_006560.1 + 85506 0.67 0.493223
Target:  5'- gGGUCGcCGGGCuGCUGCCcgcgggGGCgCUUGg -3'
miRNA:   3'- gCCAGC-GCCCGcUGGCGG------CCGaGAGC- -5'
31026 3' -64.2 NC_006560.1 + 85245 0.66 0.595346
Target:  5'- cCGGcgccCGCGGcGCGGaaGCCGGCgCUgCGg -3'
miRNA:   3'- -GCCa---GCGCC-CGCUggCGGCCGaGA-GC- -5'
31026 3' -64.2 NC_006560.1 + 84696 0.68 0.475466
Target:  5'- gCGG-CGCGGGCGACgGgC-GC-CUCGg -3'
miRNA:   3'- -GCCaGCGCCCGCUGgCgGcCGaGAGC- -5'
31026 3' -64.2 NC_006560.1 + 84499 0.66 0.595346
Target:  5'- gCGGUacCGCGGcGUGuuCGCCGcGCUCgCGc -3'
miRNA:   3'- -GCCA--GCGCC-CGCugGCGGC-CGAGaGC- -5'
31026 3' -64.2 NC_006560.1 + 83352 0.66 0.566921
Target:  5'- aGGgCGCGGGCGGCgGCCcggGGCcccagccCUCc -3'
miRNA:   3'- gCCaGCGCCCGCUGgCGG---CCGa------GAGc -5'
31026 3' -64.2 NC_006560.1 + 81469 0.67 0.520409
Target:  5'- cCGGgagagCGgGGGgGAgCGCCGGCcccgcggcCUCGa -3'
miRNA:   3'- -GCCa----GCgCCCgCUgGCGGCCGa-------GAGC- -5'
31026 3' -64.2 NC_006560.1 + 81066 0.66 0.604875
Target:  5'- uGGUCGUGGGUGugguCCaCgGGCUgcgcCUCGu -3'
miRNA:   3'- gCCAGCGCCCGCu---GGcGgCCGA----GAGC- -5'
31026 3' -64.2 NC_006560.1 + 78067 0.7 0.339482
Target:  5'- gCGGcCgGCGGcGCGGCCG-CGGCgCUCGg -3'
miRNA:   3'- -GCCaG-CGCC-CGCUGGCgGCCGaGAGC- -5'
31026 3' -64.2 NC_006560.1 + 77114 0.69 0.381824
Target:  5'- aGGggCGCGGGCgGGCCGCCGccgcccgcgccccuGCUCg-- -3'
miRNA:   3'- gCCa-GCGCCCG-CUGGCGGC--------------CGAGagc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.