miRNA display CGI


Results 61 - 80 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31026 3' -64.2 NC_006560.1 + 75347 0.68 0.449445
Target:  5'- uGGUCG-GGGCGACgCGgCGGCgcgC-CGa -3'
miRNA:   3'- gCCAGCgCCCGCUG-GCgGCCGa--GaGC- -5'
31026 3' -64.2 NC_006560.1 + 75095 0.69 0.416013
Target:  5'- aCGccCGCaGGGCGAUCGCgCGGCUCg-- -3'
miRNA:   3'- -GCcaGCG-CCCGCUGGCG-GCCGAGagc -5'
31026 3' -64.2 NC_006560.1 + 74941 0.73 0.250384
Target:  5'- aCGGUCGa-GGCGGCCGCCcgGGCccgcgacguUCUCGc -3'
miRNA:   3'- -GCCAGCgcCCGCUGGCGG--CCG---------AGAGC- -5'
31026 3' -64.2 NC_006560.1 + 74107 0.69 0.399878
Target:  5'- gGcGUCGCuGGGCGacGCCGCgGGCcaggggCUCGu -3'
miRNA:   3'- gC-CAGCG-CCCGC--UGGCGgCCGa-----GAGC- -5'
31026 3' -64.2 NC_006560.1 + 72364 0.69 0.432541
Target:  5'- gCGGcccUCGCGGGgGcGCCGCUGGCgCUg- -3'
miRNA:   3'- -GCC---AGCGCCCgC-UGGCGGCCGaGAgc -5'
31026 3' -64.2 NC_006560.1 + 72086 0.66 0.58584
Target:  5'- gGGgccccgaGCcGGCGACCccgGCCGGC-CUCGc -3'
miRNA:   3'- gCCag-----CGcCCGCUGG---CGGCCGaGAGC- -5'
31026 3' -64.2 NC_006560.1 + 71954 0.67 0.511279
Target:  5'- aCGGcCuGCGGGagGGCuCGCCGGCcUUCGu -3'
miRNA:   3'- -GCCaG-CGCCCg-CUG-GCGGCCGaGAGC- -5'
31026 3' -64.2 NC_006560.1 + 69581 0.68 0.458033
Target:  5'- uCGG-CGCGGGcCGGCCcaGCCcGCUC-CGg -3'
miRNA:   3'- -GCCaGCGCCC-GCUGG--CGGcCGAGaGC- -5'
31026 3' -64.2 NC_006560.1 + 69275 0.75 0.181485
Target:  5'- uGGcCGCGGGCGGCgGCCccGGC-CUCa -3'
miRNA:   3'- gCCaGCGCCCGCUGgCGG--CCGaGAGc -5'
31026 3' -64.2 NC_006560.1 + 67550 0.66 0.58584
Target:  5'- uCGGUguCGGGgauCGACCGCCGGUccguUCUgGg -3'
miRNA:   3'- -GCCAgcGCCC---GCUGGCGGCCG----AGAgC- -5'
31026 3' -64.2 NC_006560.1 + 66328 0.66 0.595346
Target:  5'- gGGUUGCcGGUGugCGC-GGC-CUCGu -3'
miRNA:   3'- gCCAGCGcCCGCugGCGgCCGaGAGC- -5'
31026 3' -64.2 NC_006560.1 + 66153 0.66 0.595346
Target:  5'- ---cCGC-GGCGGCaGCUGGCUCUUGa -3'
miRNA:   3'- gccaGCGcCCGCUGgCGGCCGAGAGC- -5'
31026 3' -64.2 NC_006560.1 + 66010 0.67 0.502216
Target:  5'- gGGgacCGCGGGuCGGCCGCCagGGC-CgCGa -3'
miRNA:   3'- gCCa--GCGCCC-GCUGGCGG--CCGaGaGC- -5'
31026 3' -64.2 NC_006560.1 + 65955 0.67 0.538856
Target:  5'- gCGGUacagGCGGGCGGCgCGgugCGGCgcCUCGa -3'
miRNA:   3'- -GCCAg---CGCCCGCUG-GCg--GCCGa-GAGC- -5'
31026 3' -64.2 NC_006560.1 + 65493 0.69 0.421754
Target:  5'- uCGGcguugCGCGGGCGGuaacccagaacuuuCCGgccagaaaCGGCUCUCGa -3'
miRNA:   3'- -GCCa----GCGCCCGCU--------------GGCg-------GCCGAGAGC- -5'
31026 3' -64.2 NC_006560.1 + 64938 0.7 0.376439
Target:  5'- gCGGggaCGgGGGgGcucGCCGCCGGCggcCUCGu -3'
miRNA:   3'- -GCCa--GCgCCCgC---UGGCGGCCGa--GAGC- -5'
31026 3' -64.2 NC_006560.1 + 64443 0.7 0.368834
Target:  5'- -cGUCGaagaaGGGC-ACCaGCUGGCUCUCGu -3'
miRNA:   3'- gcCAGCg----CCCGcUGG-CGGCCGAGAGC- -5'
31026 3' -64.2 NC_006560.1 + 62374 0.71 0.325455
Target:  5'- gGGUCGCGGG-GGgUGgCGGCUC-CGg -3'
miRNA:   3'- gCCAGCGCCCgCUgGCgGCCGAGaGC- -5'
31026 3' -64.2 NC_006560.1 + 58250 0.75 0.177267
Target:  5'- gGGcCGcCGaGGCGAgCCGCCGGC-CUCGg -3'
miRNA:   3'- gCCaGC-GC-CCGCU-GGCGGCCGaGAGC- -5'
31026 3' -64.2 NC_006560.1 + 57398 0.71 0.30523
Target:  5'- gGGcCGCGGccagcGCGGCCGCCccGGCgacCUCGg -3'
miRNA:   3'- gCCaGCGCC-----CGCUGGCGG--CCGa--GAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.