miRNA display CGI


Results 81 - 100 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31026 3' -64.2 NC_006560.1 + 57333 0.71 0.331713
Target:  5'- gCGGUgCGCGGGgcaGGCCGCggcgaagCGGC-CUCGg -3'
miRNA:   3'- -GCCA-GCGCCCg--CUGGCG-------GCCGaGAGC- -5'
31026 3' -64.2 NC_006560.1 + 56129 0.66 0.599155
Target:  5'- cCGGUCGgGGGCGcuGucguagaccagccuuCCGCCGGC-CgggaCGg -3'
miRNA:   3'- -GCCAGCgCCCGC--U---------------GGCGGCCGaGa---GC- -5'
31026 3' -64.2 NC_006560.1 + 55690 0.73 0.244819
Target:  5'- aGGUUGCGGGCGGgCGCCaGGC-C-CGc -3'
miRNA:   3'- gCCAGCGCCCGCUgGCGG-CCGaGaGC- -5'
31026 3' -64.2 NC_006560.1 + 55372 0.72 0.256053
Target:  5'- aCGGUCGCGGGguagcCGACgaGCCGGCagguguaCUCGc -3'
miRNA:   3'- -GCCAGCGCCC-----GCUGg-CGGCCGa------GAGC- -5'
31026 3' -64.2 NC_006560.1 + 55324 0.68 0.481645
Target:  5'- gGGUCGCGgggcgggggcucguGGCGGCCGUgGuGCUC-Ca -3'
miRNA:   3'- gCCAGCGC--------------CCGCUGGCGgC-CGAGaGc -5'
31026 3' -64.2 NC_006560.1 + 55261 0.69 0.399878
Target:  5'- gCGGcCGCGGaccccGCGGCgaCGCCGGCccaCUCGa -3'
miRNA:   3'- -GCCaGCGCC-----CGCUG--GCGGCCGa--GAGC- -5'
31026 3' -64.2 NC_006560.1 + 54663 0.77 0.129598
Target:  5'- gGGUCGCGGGgGcgcggcaGCCGCCGGCcgcgccCUCGu -3'
miRNA:   3'- gCCAGCGCCCgC-------UGGCGGCCGa-----GAGC- -5'
31026 3' -64.2 NC_006560.1 + 51975 0.68 0.458033
Target:  5'- cCGGgcgGCGGGCGGCgggccUGCCGGCg--CGg -3'
miRNA:   3'- -GCCag-CGCCCGCUG-----GCGGCCGagaGC- -5'
31026 3' -64.2 NC_006560.1 + 51729 0.69 0.416013
Target:  5'- uGGgccgacgCGCGGGCGGCCuCgCGGCgcaUCGa -3'
miRNA:   3'- gCCa------GCGCCCGCUGGcG-GCCGag-AGC- -5'
31026 3' -64.2 NC_006560.1 + 51201 0.68 0.449445
Target:  5'- gCGGugcUCGCGGaGCaGACCGUCcaguGGCUgUCGg -3'
miRNA:   3'- -GCC---AGCGCC-CG-CUGGCGG----CCGAgAGC- -5'
31026 3' -64.2 NC_006560.1 + 45882 0.71 0.328225
Target:  5'- aGGUCcacccugagcucaccGgGGGCGACCGgCGGgUCUCc -3'
miRNA:   3'- gCCAG---------------CgCCCGCUGGCgGCCgAGAGc -5'
31026 3' -64.2 NC_006560.1 + 45776 0.67 0.493223
Target:  5'- gGGgggCGCGGGCucgguCCGCCGGggcCUUUUGg -3'
miRNA:   3'- gCCa--GCGCCCGcu---GGCGGCC---GAGAGC- -5'
31026 3' -64.2 NC_006560.1 + 45728 0.7 0.346659
Target:  5'- gCGG-CGCaGGCGcGCCGCgGGCUCgCGc -3'
miRNA:   3'- -GCCaGCGcCCGC-UGGCGgCCGAGaGC- -5'
31026 3' -64.2 NC_006560.1 + 43850 0.72 0.285983
Target:  5'- gGGU-GCGGGCGACgugCGCCGGCgccagCGg -3'
miRNA:   3'- gCCAgCGCCCGCUG---GCGGCCGaga--GC- -5'
31026 3' -64.2 NC_006560.1 + 43263 0.67 0.49054
Target:  5'- gCGGUCGUGcGCGAUgaacuccuucagggCGCCGG-UCUCGc -3'
miRNA:   3'- -GCCAGCGCcCGCUG--------------GCGGCCgAGAGC- -5'
31026 3' -64.2 NC_006560.1 + 42221 0.7 0.339482
Target:  5'- gGGUCGCGcgcGGCGACCcgggggcgGCaCGcGCUCUUGa -3'
miRNA:   3'- gCCAGCGC---CCGCUGG--------CG-GC-CGAGAGC- -5'
31026 3' -64.2 NC_006560.1 + 41298 0.67 0.502216
Target:  5'- gCGGUCGCGcGGCuGCC-CCGGCcgugUCUg- -3'
miRNA:   3'- -GCCAGCGC-CCGcUGGcGGCCG----AGAgc -5'
31026 3' -64.2 NC_006560.1 + 39966 0.73 0.239357
Target:  5'- gCGG-CGCGGGCGGCUGCgUGuGCUCgccgCGa -3'
miRNA:   3'- -GCCaGCGCCCGCUGGCG-GC-CGAGa---GC- -5'
31026 3' -64.2 NC_006560.1 + 39592 0.7 0.339482
Target:  5'- uCGGUgGCGGGCG--CGCCGGCcCgCGg -3'
miRNA:   3'- -GCCAgCGCCCGCugGCGGCCGaGaGC- -5'
31026 3' -64.2 NC_006560.1 + 39454 0.66 0.55752
Target:  5'- aCGGcgcugCGCGGucgGCG-CCGCCGGCg--CGg -3'
miRNA:   3'- -GCCa----GCGCC---CGCuGGCGGCCGagaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.