Results 81 - 100 of 155 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31026 | 3' | -64.2 | NC_006560.1 | + | 88561 | 0.67 | 0.528681 |
Target: 5'- gCGGggCGCGccugaGGCGGCCGUCGuGCacgccgacgcgcaUCUCGg -3' miRNA: 3'- -GCCa-GCGC-----CCGCUGGCGGC-CG-------------AGAGC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 148628 | 0.67 | 0.520409 |
Target: 5'- gCGGUCcccgaCGGGCGGgccCCGCCGGC-Cg-- -3' miRNA: 3'- -GCCAGc----GCCCGCU---GGCGGCCGaGagc -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 81469 | 0.67 | 0.520409 |
Target: 5'- cCGGgagagCGgGGGgGAgCGCCGGCcccgcggcCUCGa -3' miRNA: 3'- -GCCa----GCgCCCgCUgGCGGCCGa-------GAGC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 147063 | 0.67 | 0.511279 |
Target: 5'- gGGagGCGGGCGGCgaGUCGGCgaUCa -3' miRNA: 3'- gCCagCGCCCGCUGg-CGGCCGagAGc -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 126372 | 0.67 | 0.511279 |
Target: 5'- aCGGgcucgaCGgGGGCG-CCGCCcGGgUCUCc -3' miRNA: 3'- -GCCa-----GCgCCCGCuGGCGG-CCgAGAGc -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 71954 | 0.67 | 0.511279 |
Target: 5'- aCGGcCuGCGGGagGGCuCGCCGGCcUUCGu -3' miRNA: 3'- -GCCaG-CGCCCg-CUG-GCGGCCGaGAGC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 3050 | 0.67 | 0.508553 |
Target: 5'- aGG-CGCGGagcggcccgagggcGCGGCCGgagcCCGGCUCgggCGg -3' miRNA: 3'- gCCaGCGCC--------------CGCUGGC----GGCCGAGa--GC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 33109 | 0.67 | 0.538856 |
Target: 5'- gGGUCGCGgggaaGGCGGCCGCgGGgaaggCGg -3' miRNA: 3'- gCCAGCGC-----CCGCUGGCGgCCgaga-GC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 34364 | 0.67 | 0.538856 |
Target: 5'- aGGagGgGGGCGcCCGCC-GC-CUCGg -3' miRNA: 3'- gCCagCgCCCGCuGGCGGcCGaGAGC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 118535 | 0.67 | 0.538856 |
Target: 5'- uGGcCGgGGGgGACCGCCccggcuGGCUguggagccggcgCUCGg -3' miRNA: 3'- gCCaGCgCCCgCUGGCGG------CCGA------------GAGC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 139158 | 0.66 | 0.575418 |
Target: 5'- aGGUCcuuGCGGaucguguccgugaGCuGCCGCCGGCccagCUCGu -3' miRNA: 3'- gCCAG---CGCC-------------CGcUGGCGGCCGa---GAGC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 149846 | 0.66 | 0.566921 |
Target: 5'- cCGGcCGCGGGCGggagACCcCCGGCa---- -3' miRNA: 3'- -GCCaGCGCCCGC----UGGcGGCCGagagc -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 119114 | 0.66 | 0.566921 |
Target: 5'- gCGGgccuucCGCGGGCGccgguucguGCCGCCGGgcgacgacCUCcCGg -3' miRNA: 3'- -GCCa-----GCGCCCGC---------UGGCGGCC--------GAGaGC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 83352 | 0.66 | 0.566921 |
Target: 5'- aGGgCGCGGGCGGCgGCCcggGGCcccagccCUCc -3' miRNA: 3'- gCCaGCGCCCGCUGgCGG---CCGa------GAGc -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 39454 | 0.66 | 0.55752 |
Target: 5'- aCGGcgcugCGCGGucgGCG-CCGCCGGCg--CGg -3' miRNA: 3'- -GCCa----GCGCC---CGCuGGCGGCCGagaGC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 22864 | 0.66 | 0.55752 |
Target: 5'- aCGG-CGgccUGGGCGacaGCCGCCcggGGCUCUgGg -3' miRNA: 3'- -GCCaGC---GCCCGC---UGGCGG---CCGAGAgC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 90124 | 0.66 | 0.55752 |
Target: 5'- aCGGUCgGCGGGgacGCCGuCCGGCggaucccgCUCu -3' miRNA: 3'- -GCCAG-CGCCCgc-UGGC-GGCCGa-------GAGc -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 125524 | 0.66 | 0.548163 |
Target: 5'- cCGGcCGCGGuGCGcgccGCCGCCGGggCg-- -3' miRNA: 3'- -GCCaGCGCC-CGC----UGGCGGCCgaGagc -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 35804 | 0.66 | 0.548163 |
Target: 5'- gCGGUCGCccccGGGuUGAUUGUuaUGGCUCUCc -3' miRNA: 3'- -GCCAGCG----CCC-GCUGGCG--GCCGAGAGc -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 21762 | 0.66 | 0.54723 |
Target: 5'- gGGUauaugagGCGGGCGGCCGUgcgaucguguagaCGGCagUCGc -3' miRNA: 3'- gCCAg------CGCCCGCUGGCG-------------GCCGagAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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