Results 41 - 60 of 155 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31026 | 3' | -64.2 | NC_006560.1 | + | 21650 | 0.66 | 0.604875 |
Target: 5'- --cUCGaCGGGCGgcGCCGCCGGC-Cg-- -3' miRNA: 3'- gccAGC-GCCCGC--UGGCGGCCGaGagc -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 21689 | 0.66 | 0.604875 |
Target: 5'- --cUCGaCGGGCGgcGCCGCCGGC-Cg-- -3' miRNA: 3'- gccAGC-GCCCGC--UGGCGGCCGaGagc -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 99146 | 0.66 | 0.604875 |
Target: 5'- gGGUCGCcggccucgccggGGGCGGCCGUCccgGGCgccgCGc -3' miRNA: 3'- gCCAGCG------------CCCGCUGGCGG---CCGaga-GC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 99947 | 0.66 | 0.604875 |
Target: 5'- aCGGgagggCGCGGGUacgcgGugCGCCGucGCUCgcgUCGg -3' miRNA: 3'- -GCCa----GCGCCCG-----CugGCGGC--CGAG---AGC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 25060 | 0.66 | 0.604875 |
Target: 5'- cCGcG-CGCGaGGCGgccGCCGCCGGCgcgCcCGa -3' miRNA: 3'- -GC-CaGCGC-CCGC---UGGCGGCCGa--GaGC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 84499 | 0.66 | 0.595346 |
Target: 5'- gCGGUacCGCGGcGUGuuCGCCGcGCUCgCGc -3' miRNA: 3'- -GCCA--GCGCC-CGCugGCGGC-CGAGaGC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 66328 | 0.66 | 0.595346 |
Target: 5'- gGGUUGCcGGUGugCGC-GGC-CUCGu -3' miRNA: 3'- gCCAGCGcCCGCugGCGgCCGaGAGC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 119114 | 0.66 | 0.566921 |
Target: 5'- gCGGgccuucCGCGGGCGccgguucguGCCGCCGGgcgacgacCUCcCGg -3' miRNA: 3'- -GCCa-----GCGCCCGC---------UGGCGGCC--------GAGaGC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 149846 | 0.66 | 0.566921 |
Target: 5'- cCGGcCGCGGGCGggagACCcCCGGCa---- -3' miRNA: 3'- -GCCaGCGCCCGC----UGGcGGCCGagagc -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 139158 | 0.66 | 0.575418 |
Target: 5'- aGGUCcuuGCGGaucguguccgugaGCuGCCGCCGGCccagCUCGu -3' miRNA: 3'- gCCAG---CGCC-------------CGcUGGCGGCCGa---GAGC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 98234 | 0.66 | 0.576363 |
Target: 5'- gGGcaUCGUGGGCGGggucgucuCCGCCG--UCUCGg -3' miRNA: 3'- gCC--AGCGCCCGCU--------GGCGGCcgAGAGC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 130506 | 0.66 | 0.576363 |
Target: 5'- aGGcCGCGcccGGCGGCCGgCCGGUgg-CGc -3' miRNA: 3'- gCCaGCGC---CCGCUGGC-GGCCGagaGC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 118321 | 0.66 | 0.576363 |
Target: 5'- gCGGcCGcCGuGGCGGCgGCCGGCg---- -3' miRNA: 3'- -GCCaGC-GC-CCGCUGgCGGCCGagagc -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 142441 | 0.66 | 0.576363 |
Target: 5'- cCGG-CGCGG-CGGCCGCgCGGCcC-CGc -3' miRNA: 3'- -GCCaGCGCCcGCUGGCG-GCCGaGaGC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 94450 | 0.66 | 0.58015 |
Target: 5'- gCGG-CGCGGGCGcGCgCGCUgcgcgugcuggaccaGGCcCUCGa -3' miRNA: 3'- -GCCaGCGCCCGC-UG-GCGG---------------CCGaGAGC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 67550 | 0.66 | 0.58584 |
Target: 5'- uCGGUguCGGGgauCGACCGCCGGUccguUCUgGg -3' miRNA: 3'- -GCCAgcGCCC---GCUGGCGGCCG----AGAgC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 72086 | 0.66 | 0.58584 |
Target: 5'- gGGgccccgaGCcGGCGACCccgGCCGGC-CUCGc -3' miRNA: 3'- gCCag-----CGcCCGCUGG---CGGCCGaGAGC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 88358 | 0.66 | 0.592491 |
Target: 5'- cCGGcCGUGGGCGcgccaggcacccCCGCCGuGCUgcgcgugCUCGa -3' miRNA: 3'- -GCCaGCGCCCGCu-----------GGCGGC-CGA-------GAGC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 11645 | 0.66 | 0.595346 |
Target: 5'- gCGGUCcggGCGGGCGGgggagUCGCUuccgggGGCUCggCGg -3' miRNA: 3'- -GCCAG---CGCCCGCU-----GGCGG------CCGAGa-GC- -5' |
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31026 | 3' | -64.2 | NC_006560.1 | + | 24593 | 0.66 | 0.595346 |
Target: 5'- uGGgcgCGCaGGGCGugCuCCuGCUCUCc -3' miRNA: 3'- gCCa--GCG-CCCGCugGcGGcCGAGAGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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