miRNA display CGI


Results 21 - 40 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31026 3' -64.2 NC_006560.1 + 72086 0.66 0.58584
Target:  5'- gGGgccccgaGCcGGCGACCccgGCCGGC-CUCGc -3'
miRNA:   3'- gCCag-----CGcCCGCUGG---CGGCCGaGAGC- -5'
31026 3' -64.2 NC_006560.1 + 94450 0.66 0.58015
Target:  5'- gCGG-CGCGGGCGcGCgCGCUgcgcgugcuggaccaGGCcCUCGa -3'
miRNA:   3'- -GCCaGCGCCCGC-UG-GCGG---------------CCGaGAGC- -5'
31026 3' -64.2 NC_006560.1 + 98234 0.66 0.576363
Target:  5'- gGGcaUCGUGGGCGGggucgucuCCGCCG--UCUCGg -3'
miRNA:   3'- gCC--AGCGCCCGCU--------GGCGGCcgAGAGC- -5'
31026 3' -64.2 NC_006560.1 + 130506 0.66 0.576363
Target:  5'- aGGcCGCGcccGGCGGCCGgCCGGUgg-CGc -3'
miRNA:   3'- gCCaGCGC---CCGCUGGC-GGCCGagaGC- -5'
31026 3' -64.2 NC_006560.1 + 118321 0.66 0.576363
Target:  5'- gCGGcCGcCGuGGCGGCgGCCGGCg---- -3'
miRNA:   3'- -GCCaGC-GC-CCGCUGgCGGCCGagagc -5'
31026 3' -64.2 NC_006560.1 + 142441 0.66 0.576363
Target:  5'- cCGG-CGCGG-CGGCCGCgCGGCcC-CGc -3'
miRNA:   3'- -GCCaGCGCCcGCUGGCG-GCCGaGaGC- -5'
31026 3' -64.2 NC_006560.1 + 139158 0.66 0.575418
Target:  5'- aGGUCcuuGCGGaucguguccgugaGCuGCCGCCGGCccagCUCGu -3'
miRNA:   3'- gCCAG---CGCC-------------CGcUGGCGGCCGa---GAGC- -5'
31026 3' -64.2 NC_006560.1 + 149846 0.66 0.566921
Target:  5'- cCGGcCGCGGGCGggagACCcCCGGCa---- -3'
miRNA:   3'- -GCCaGCGCCCGC----UGGcGGCCGagagc -5'
31026 3' -64.2 NC_006560.1 + 119114 0.66 0.566921
Target:  5'- gCGGgccuucCGCGGGCGccgguucguGCCGCCGGgcgacgacCUCcCGg -3'
miRNA:   3'- -GCCa-----GCGCCCGC---------UGGCGGCC--------GAGaGC- -5'
31026 3' -64.2 NC_006560.1 + 83352 0.66 0.566921
Target:  5'- aGGgCGCGGGCGGCgGCCcggGGCcccagccCUCc -3'
miRNA:   3'- gCCaGCGCCCGCUGgCGG---CCGa------GAGc -5'
31026 3' -64.2 NC_006560.1 + 90124 0.66 0.55752
Target:  5'- aCGGUCgGCGGGgacGCCGuCCGGCggaucccgCUCu -3'
miRNA:   3'- -GCCAG-CGCCCgc-UGGC-GGCCGa-------GAGc -5'
31026 3' -64.2 NC_006560.1 + 22864 0.66 0.55752
Target:  5'- aCGG-CGgccUGGGCGacaGCCGCCcggGGCUCUgGg -3'
miRNA:   3'- -GCCaGC---GCCCGC---UGGCGG---CCGAGAgC- -5'
31026 3' -64.2 NC_006560.1 + 39454 0.66 0.55752
Target:  5'- aCGGcgcugCGCGGucgGCG-CCGCCGGCg--CGg -3'
miRNA:   3'- -GCCa----GCGCC---CGCuGGCGGCCGagaGC- -5'
31026 3' -64.2 NC_006560.1 + 125524 0.66 0.548163
Target:  5'- cCGGcCGCGGuGCGcgccGCCGCCGGggCg-- -3'
miRNA:   3'- -GCCaGCGCC-CGC----UGGCGGCCgaGagc -5'
31026 3' -64.2 NC_006560.1 + 35804 0.66 0.548163
Target:  5'- gCGGUCGCccccGGGuUGAUUGUuaUGGCUCUCc -3'
miRNA:   3'- -GCCAGCG----CCC-GCUGGCG--GCCGAGAGc -5'
31026 3' -64.2 NC_006560.1 + 21762 0.66 0.54723
Target:  5'- gGGUauaugagGCGGGCGGCCGUgcgaucguguagaCGGCagUCGc -3'
miRNA:   3'- gCCAg------CGCCCGCUGGCG-------------GCCGagAGC- -5'
31026 3' -64.2 NC_006560.1 + 118535 0.67 0.538856
Target:  5'- uGGcCGgGGGgGACCGCCccggcuGGCUguggagccggcgCUCGg -3'
miRNA:   3'- gCCaGCgCCCgCUGGCGG------CCGA------------GAGC- -5'
31026 3' -64.2 NC_006560.1 + 34364 0.67 0.538856
Target:  5'- aGGagGgGGGCGcCCGCC-GC-CUCGg -3'
miRNA:   3'- gCCagCgCCCGCuGGCGGcCGaGAGC- -5'
31026 3' -64.2 NC_006560.1 + 33109 0.67 0.538856
Target:  5'- gGGUCGCGgggaaGGCGGCCGCgGGgaaggCGg -3'
miRNA:   3'- gCCAGCGC-----CCGCUGGCGgCCgaga-GC- -5'
31026 3' -64.2 NC_006560.1 + 65955 0.67 0.538856
Target:  5'- gCGGUacagGCGGGCGGCgCGgugCGGCgcCUCGa -3'
miRNA:   3'- -GCCAg---CGCCCGCUG-GCg--GCCGa-GAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.