miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31026 5' -53.5 NC_006560.1 + 33845 0.66 0.969181
Target:  5'- -cCGCGgGCguGGggGCGcgCGCGCg -3'
miRNA:   3'- gaGCGCaUGguCUaaCGCaaGCGCGa -5'
31026 5' -53.5 NC_006560.1 + 41264 0.66 0.968569
Target:  5'- cCUCGCGcccacgcucaggGCCAGGaacguccggGCGgUCGCGCg -3'
miRNA:   3'- -GAGCGCa-----------UGGUCUaa-------CGCaAGCGCGa -5'
31026 5' -53.5 NC_006560.1 + 92657 0.66 0.962675
Target:  5'- -cCGCGgGCCGGGUU-CGUgUGCGCg -3'
miRNA:   3'- gaGCGCaUGGUCUAAcGCAaGCGCGa -5'
31026 5' -53.5 NC_006560.1 + 126430 0.66 0.962675
Target:  5'- -gCGCGcGCCGGAUcGCcGagCGCGCg -3'
miRNA:   3'- gaGCGCaUGGUCUAaCG-CaaGCGCGa -5'
31026 5' -53.5 NC_006560.1 + 3728 0.66 0.959088
Target:  5'- gCUCGCGcaGCCAGGcgcGCGggCGCGg- -3'
miRNA:   3'- -GAGCGCa-UGGUCUaa-CGCaaGCGCga -5'
31026 5' -53.5 NC_006560.1 + 131132 0.66 0.959088
Target:  5'- -cCGCG-GCCGGg--GCGcgCGCGCUc -3'
miRNA:   3'- gaGCGCaUGGUCuaaCGCaaGCGCGA- -5'
31026 5' -53.5 NC_006560.1 + 127133 0.66 0.955271
Target:  5'- gUCGCGUGCguGAccaccaUGCGggUCGCGg- -3'
miRNA:   3'- gAGCGCAUGguCUa-----ACGCa-AGCGCga -5'
31026 5' -53.5 NC_006560.1 + 124841 0.66 0.955271
Target:  5'- -aCGCGUGCgGGGUccucGUGgaCGCGCa -3'
miRNA:   3'- gaGCGCAUGgUCUAa---CGCaaGCGCGa -5'
31026 5' -53.5 NC_006560.1 + 134077 0.67 0.951219
Target:  5'- -cUGCGUcGCCAGGUccGUGUucgucUCGCGCa -3'
miRNA:   3'- gaGCGCA-UGGUCUAa-CGCA-----AGCGCGa -5'
31026 5' -53.5 NC_006560.1 + 15438 0.67 0.946929
Target:  5'- -gCGCGc-CCGGcgcGCGUUCGCGCc -3'
miRNA:   3'- gaGCGCauGGUCuaaCGCAAGCGCGa -5'
31026 5' -53.5 NC_006560.1 + 42716 0.67 0.946486
Target:  5'- uCUCGCGUcagggccgcgaucGCCGGgg-GCGUguccgCGUGCg -3'
miRNA:   3'- -GAGCGCA-------------UGGUCuaaCGCAa----GCGCGa -5'
31026 5' -53.5 NC_006560.1 + 5511 0.67 0.942397
Target:  5'- gUCGCG-GCgAGGgucgGCGgcggUCGCGCUc -3'
miRNA:   3'- gAGCGCaUGgUCUaa--CGCa---AGCGCGA- -5'
31026 5' -53.5 NC_006560.1 + 112805 0.67 0.937621
Target:  5'- cCUCGUGgcCCAcGUggagGCGcUCGCGCa -3'
miRNA:   3'- -GAGCGCauGGUcUAa---CGCaAGCGCGa -5'
31026 5' -53.5 NC_006560.1 + 143383 0.67 0.937621
Target:  5'- --gGCGUACCGGGggGCGgcggcccUCgGCGCa -3'
miRNA:   3'- gagCGCAUGGUCUaaCGCa------AG-CGCGa -5'
31026 5' -53.5 NC_006560.1 + 67471 0.68 0.927329
Target:  5'- cCUCGCGUAUCcauaGGAUcGCGUUC-CGUc -3'
miRNA:   3'- -GAGCGCAUGG----UCUAaCGCAAGcGCGa -5'
31026 5' -53.5 NC_006560.1 + 149969 0.68 0.927329
Target:  5'- -gCGCGUGUCGGAUcGgGUcCGCGCUa -3'
miRNA:   3'- gaGCGCAUGGUCUAaCgCAaGCGCGA- -5'
31026 5' -53.5 NC_006560.1 + 4685 0.68 0.921812
Target:  5'- gUCGCGcccgGCCAcGGcgGCGcgCGCGCg -3'
miRNA:   3'- gAGCGCa---UGGU-CUaaCGCaaGCGCGa -5'
31026 5' -53.5 NC_006560.1 + 138190 0.68 0.919536
Target:  5'- aUCGCGUcCCGGGgcugccUGCGgcacgacgcucugUCGCGCg -3'
miRNA:   3'- gAGCGCAuGGUCUa-----ACGCa------------AGCGCGa -5'
31026 5' -53.5 NC_006560.1 + 112291 0.68 0.916048
Target:  5'- gUgGCGgaggGCCAGAUgacgcccgaGCaGUUCGCGCg -3'
miRNA:   3'- gAgCGCa---UGGUCUAa--------CG-CAAGCGCGa -5'
31026 5' -53.5 NC_006560.1 + 77200 0.68 0.910038
Target:  5'- -cCGCGcGCCGGAccUGCGgauggUGCGCUg -3'
miRNA:   3'- gaGCGCaUGGUCUa-ACGCaa---GCGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.