miRNA display CGI


Results 21 - 40 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31027 3' -56.1 NC_006560.1 + 52253 0.66 0.899467
Target:  5'- gGCG-CGGCGc-ACCGCCCcgaUGCgggcgCGGCg -3'
miRNA:   3'- -UGCaGUUGUucUGGCGGG---ACGa----GCCG- -5'
31027 3' -56.1 NC_006560.1 + 87971 0.66 0.899467
Target:  5'- gGCGUCGAC---GCCGCCCUcGUacuugcggaucUCGGg -3'
miRNA:   3'- -UGCAGUUGuucUGGCGGGA-CG-----------AGCCg -5'
31027 3' -56.1 NC_006560.1 + 120289 0.66 0.899467
Target:  5'- cCGUCGGCccacgcGGACucggucaaCGCCCUGUgggacUCGGCc -3'
miRNA:   3'- uGCAGUUGu-----UCUG--------GCGGGACG-----AGCCG- -5'
31027 3' -56.1 NC_006560.1 + 129004 0.66 0.899467
Target:  5'- cGCG-CGACuucuGCCGCuuCCUGCgCGGCg -3'
miRNA:   3'- -UGCaGUUGuuc-UGGCG--GGACGaGCCG- -5'
31027 3' -56.1 NC_006560.1 + 115810 0.66 0.899467
Target:  5'- cCGUguACGAGGCgcucguCGCCUgGCUCGcGCa -3'
miRNA:   3'- uGCAguUGUUCUG------GCGGGaCGAGC-CG- -5'
31027 3' -56.1 NC_006560.1 + 141740 0.66 0.895575
Target:  5'- -aGUUAACAAGccCCGCCCccgcgcccgcguugGCgcgCGGCg -3'
miRNA:   3'- ugCAGUUGUUCu-GGCGGGa-------------CGa--GCCG- -5'
31027 3' -56.1 NC_006560.1 + 2173 0.66 0.892934
Target:  5'- cGCGgcgGGCAGGGCCucggGCCCgGCgcgcgCGGCc -3'
miRNA:   3'- -UGCag-UUGUUCUGG----CGGGaCGa----GCCG- -5'
31027 3' -56.1 NC_006560.1 + 145957 0.66 0.892934
Target:  5'- uGCGgccgccCAGCA--GCgCGCCCUGCUCGaagaGCa -3'
miRNA:   3'- -UGCa-----GUUGUucUG-GCGGGACGAGC----CG- -5'
31027 3' -56.1 NC_006560.1 + 35705 0.66 0.892934
Target:  5'- aGCGagaaAGCGAGAgUGCUCUGUUCcgGGCg -3'
miRNA:   3'- -UGCag--UUGUUCUgGCGGGACGAG--CCG- -5'
31027 3' -56.1 NC_006560.1 + 58394 0.66 0.892269
Target:  5'- cGCGUCGGCGcccccggGGGCCGCgUcggUGCUcCGGg -3'
miRNA:   3'- -UGCAGUUGU-------UCUGGCGgG---ACGA-GCCg -5'
31027 3' -56.1 NC_006560.1 + 23399 0.66 0.892269
Target:  5'- gGCGUCGucgccgcGCAGcgccgccuggcGGCCGCCCUcGCcgccgaccgCGGCg -3'
miRNA:   3'- -UGCAGU-------UGUU-----------CUGGCGGGA-CGa--------GCCG- -5'
31027 3' -56.1 NC_006560.1 + 18420 0.66 0.886174
Target:  5'- uGCGgcugCGACccGGCCGCCgCgGC-CGGCg -3'
miRNA:   3'- -UGCa---GUUGuuCUGGCGG-GaCGaGCCG- -5'
31027 3' -56.1 NC_006560.1 + 51483 0.66 0.886174
Target:  5'- gGCGgCGGCcccGAGGCCgagGCCCgGCcCGGCg -3'
miRNA:   3'- -UGCaGUUG---UUCUGG---CGGGaCGaGCCG- -5'
31027 3' -56.1 NC_006560.1 + 67064 0.66 0.886174
Target:  5'- gACGUgAuggaggGCGGGGCUGCCCg---CGGCg -3'
miRNA:   3'- -UGCAgU------UGUUCUGGCGGGacgaGCCG- -5'
31027 3' -56.1 NC_006560.1 + 29837 0.66 0.886174
Target:  5'- aGCGcaUCGACGAGACCcaGCUCUGCgccGCc -3'
miRNA:   3'- -UGC--AGUUGUUCUGG--CGGGACGagcCG- -5'
31027 3' -56.1 NC_006560.1 + 126371 0.66 0.886174
Target:  5'- cACGggcUCGACGGGggcGCCGCCCgggucuccgccGCgcgCGGCg -3'
miRNA:   3'- -UGC---AGUUGUUC---UGGCGGGa----------CGa--GCCG- -5'
31027 3' -56.1 NC_006560.1 + 130598 0.66 0.886174
Target:  5'- cACGUCGccGCGcGGCCGgCC-GCgCGGCu -3'
miRNA:   3'- -UGCAGU--UGUuCUGGCgGGaCGaGCCG- -5'
31027 3' -56.1 NC_006560.1 + 133240 0.66 0.886174
Target:  5'- gACGUCAACccgcGACaCGCCCgucgCGGUg -3'
miRNA:   3'- -UGCAGUUGuu--CUG-GCGGGacgaGCCG- -5'
31027 3' -56.1 NC_006560.1 + 138192 0.66 0.886174
Target:  5'- cGCGUCc-CGGGGCUGCCUg---CGGCa -3'
miRNA:   3'- -UGCAGuuGUUCUGGCGGGacgaGCCG- -5'
31027 3' -56.1 NC_006560.1 + 50229 0.67 0.882011
Target:  5'- cGCGUCcgccccccgggAACGuGGCCGCcgcgccuccgggcggCCggGCUCGGCg -3'
miRNA:   3'- -UGCAG-----------UUGUuCUGGCG---------------GGa-CGAGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.