miRNA display CGI


Results 81 - 100 of 417 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31027 5' -67.4 NC_006560.1 + 124785 0.66 0.410419
Target:  5'- -gGCCGGGCggcGCUucguguucugcgagCCCGGCgaCGCGCCc -3'
miRNA:   3'- ugCGGUCCGa--CGG--------------GGGCCG--GCGUGGc -5'
31027 5' -67.4 NC_006560.1 + 109028 0.67 0.363753
Target:  5'- gACGCUGuccaggaacaccucGuGCUcGCCCaCCGGCCGCACg- -3'
miRNA:   3'- -UGCGGU--------------C-CGA-CGGG-GGCCGGCGUGgc -5'
31027 5' -67.4 NC_006560.1 + 39448 0.67 0.358554
Target:  5'- aGCGCCAcGGC-GCUgCgCGGUCGgCGCCGc -3'
miRNA:   3'- -UGCGGU-CCGaCGGgG-GCCGGC-GUGGC- -5'
31027 5' -67.4 NC_006560.1 + 134235 0.67 0.358554
Target:  5'- cCGCCGcgcGGCccGCCCCCgcGGCCcGC-CCGa -3'
miRNA:   3'- uGCGGU---CCGa-CGGGGG--CCGG-CGuGGC- -5'
31027 5' -67.4 NC_006560.1 + 131107 0.67 0.358554
Target:  5'- cACGCCgagcuggcggGGGCcugGCCCgCGGCCGgGgCGc -3'
miRNA:   3'- -UGCGG----------UCCGa--CGGGgGCCGGCgUgGC- -5'
31027 5' -67.4 NC_006560.1 + 34114 0.67 0.358554
Target:  5'- cACGCCucucGCUcGCgaacccccccuCCCCGGUCGCGCUGu -3'
miRNA:   3'- -UGCGGuc--CGA-CG-----------GGGGCCGGCGUGGC- -5'
31027 5' -67.4 NC_006560.1 + 118338 0.67 0.358554
Target:  5'- -gGCC-GGCgGCCCCCGcGaCGaCGCCGg -3'
miRNA:   3'- ugCGGuCCGaCGGGGGC-CgGC-GUGGC- -5'
31027 5' -67.4 NC_006560.1 + 89028 0.67 0.358554
Target:  5'- -gGCgGGGCgcGUCCCCGGUCGC-CUa -3'
miRNA:   3'- ugCGgUCCGa-CGGGGGCCGGCGuGGc -5'
31027 5' -67.4 NC_006560.1 + 43729 0.67 0.358554
Target:  5'- uCGCCGGGCgcguaCUCCgCGGCCGC-CgCGg -3'
miRNA:   3'- uGCGGUCCGac---GGGG-GCCGGCGuG-GC- -5'
31027 5' -67.4 NC_006560.1 + 3942 0.67 0.363753
Target:  5'- gGCGCCgcggucggcggcgaGGGCgGCCgCCaGGCgGCGCUGc -3'
miRNA:   3'- -UGCGG--------------UCCGaCGGgGG-CCGgCGUGGC- -5'
31027 5' -67.4 NC_006560.1 + 104184 0.67 0.3645
Target:  5'- cGCGCUaccucguGGGgaGCCUgucgcugCCGGCCGUGCUGu -3'
miRNA:   3'- -UGCGG-------UCCgaCGGG-------GGCCGGCGUGGC- -5'
31027 5' -67.4 NC_006560.1 + 54235 0.67 0.365997
Target:  5'- uCGCCcgGGGaggGCgCCCGGCCccGCGCCc -3'
miRNA:   3'- uGCGG--UCCga-CGgGGGCCGG--CGUGGc -5'
31027 5' -67.4 NC_006560.1 + 33481 0.67 0.358554
Target:  5'- gGCGgCGGGggGCCgCCGGCagggaggcggGCGCCGg -3'
miRNA:   3'- -UGCgGUCCgaCGGgGGCCGg---------CGUGGC- -5'
31027 5' -67.4 NC_006560.1 + 88680 0.67 0.365997
Target:  5'- gGCG-CGGGCUGCgCgCCgCGGCCggcggcggcagaGCGCCGc -3'
miRNA:   3'- -UGCgGUCCGACG-G-GG-GCCGG------------CGUGGC- -5'
31027 5' -67.4 NC_006560.1 + 61639 0.67 0.365997
Target:  5'- cGCGuCCAGGauccgGCUgUCGGCCGgCGCCu -3'
miRNA:   3'- -UGC-GGUCCga---CGGgGGCCGGC-GUGGc -5'
31027 5' -67.4 NC_006560.1 + 56082 0.67 0.365997
Target:  5'- uGCGCCccgGGGCccGCCCCCuccGCCcagcGCACCc -3'
miRNA:   3'- -UGCGG---UCCGa-CGGGGGc--CGG----CGUGGc -5'
31027 5' -67.4 NC_006560.1 + 48158 0.67 0.365997
Target:  5'- -aGCCAGGCgcagauuaUGCCgCC-GCCGC-CCGu -3'
miRNA:   3'- ugCGGUCCG--------ACGGgGGcCGGCGuGGC- -5'
31027 5' -67.4 NC_006560.1 + 35277 0.67 0.365997
Target:  5'- cGCGCCGGGCggcgggGCCCgggguCCGGgggCGCGgCGg -3'
miRNA:   3'- -UGCGGUCCGa-----CGGG-----GGCCg--GCGUgGC- -5'
31027 5' -67.4 NC_006560.1 + 23775 0.67 0.365997
Target:  5'- uCGCC-GGC-GCCgCCGcGCCGCugCu -3'
miRNA:   3'- uGCGGuCCGaCGGgGGC-CGGCGugGc -5'
31027 5' -67.4 NC_006560.1 + 23187 0.67 0.365997
Target:  5'- cCGCCGGGCgcuucgGCUggggCCUGGCCcaCGCCGc -3'
miRNA:   3'- uGCGGUCCGa-----CGG----GGGCCGGc-GUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.