Results 61 - 80 of 417 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31027 | 5' | -67.4 | NC_006560.1 | + | 18961 | 0.72 | 0.152654 |
Target: 5'- gGCGCCGGGC-GUCgCgGGCCGCgacGCCGc -3' miRNA: 3'- -UGCGGUCCGaCGGgGgCCGGCG---UGGC- -5' |
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31027 | 5' | -67.4 | NC_006560.1 | + | 149268 | 0.72 | 0.156336 |
Target: 5'- cCGCCGGGCgccuccCCCUCGGCCcGCcCCGg -3' miRNA: 3'- uGCGGUCCGac----GGGGGCCGG-CGuGGC- -5' |
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31027 | 5' | -67.4 | NC_006560.1 | + | 106565 | 0.72 | 0.156336 |
Target: 5'- uACGCCGGGUUccucggggGCCggggCCUGGCCGCcCCGg -3' miRNA: 3'- -UGCGGUCCGA--------CGG----GGGCCGGCGuGGC- -5' |
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31027 | 5' | -67.4 | NC_006560.1 | + | 49910 | 0.72 | 0.163941 |
Target: 5'- uCGCCccGUUccGCCCCCGcccGCCGCGCCGa -3' miRNA: 3'- uGCGGucCGA--CGGGGGC---CGGCGUGGC- -5' |
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31027 | 5' | -67.4 | NC_006560.1 | + | 79859 | 0.72 | 0.152654 |
Target: 5'- -aGCCGGGCcGCCCCCGcCCcCGCCa -3' miRNA: 3'- ugCGGUCCGaCGGGGGCcGGcGUGGc -5' |
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31027 | 5' | -67.4 | NC_006560.1 | + | 35013 | 0.72 | 0.163941 |
Target: 5'- -gGCCGGGC-GCCCCCuccGGuCCGcCGCCGc -3' miRNA: 3'- ugCGGUCCGaCGGGGG---CC-GGC-GUGGC- -5' |
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31027 | 5' | -67.4 | NC_006560.1 | + | 39666 | 0.72 | 0.156336 |
Target: 5'- -gGCCGcGGCcgcGCCCCgGGCCGCcCCGc -3' miRNA: 3'- ugCGGU-CCGa--CGGGGgCCGGCGuGGC- -5' |
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31027 | 5' | -67.4 | NC_006560.1 | + | 130510 | 0.72 | 0.171877 |
Target: 5'- cGCGCCcGGCgGCCggCCGGUgGCGCCGc -3' miRNA: 3'- -UGCGGuCCGaCGGg-GGCCGgCGUGGC- -5' |
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31027 | 5' | -67.4 | NC_006560.1 | + | 9168 | 0.72 | 0.16668 |
Target: 5'- aACGUCGGGC-GCCUCgGGCCcgcgacgggcgucaGCGCCGg -3' miRNA: 3'- -UGCGGUCCGaCGGGGgCCGG--------------CGUGGC- -5' |
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31027 | 5' | -67.4 | NC_006560.1 | + | 25063 | 0.72 | 0.160098 |
Target: 5'- cGCGCgAGGCggccGCCgCCGGCgCGC-CCGa -3' miRNA: 3'- -UGCGgUCCGa---CGGgGGCCG-GCGuGGC- -5' |
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31027 | 5' | -67.4 | NC_006560.1 | + | 125495 | 0.72 | 0.156336 |
Target: 5'- uGCGCCugGGGgacGCCCCCGccuCCGCGCCGg -3' miRNA: 3'- -UGCGG--UCCga-CGGGGGCc--GGCGUGGC- -5' |
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31027 | 5' | -67.4 | NC_006560.1 | + | 22710 | 0.72 | 0.171877 |
Target: 5'- gACGCCacGGGCcGCUUCaCGGCCGCGCgGc -3' miRNA: 3'- -UGCGG--UCCGaCGGGG-GCCGGCGUGgC- -5' |
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31027 | 5' | -67.4 | NC_006560.1 | + | 148679 | 0.72 | 0.163941 |
Target: 5'- gGCGCCguGGGCgGCCCCgGgGCCGCcguCCa -3' miRNA: 3'- -UGCGG--UCCGaCGGGGgC-CGGCGu--GGc -5' |
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31027 | 5' | -67.4 | NC_006560.1 | + | 88901 | 0.72 | 0.167867 |
Target: 5'- -gGCCGGGUcGCCggCCGGCCGUGCCu -3' miRNA: 3'- ugCGGUCCGaCGGg-GGCCGGCGUGGc -5' |
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31027 | 5' | -67.4 | NC_006560.1 | + | 120189 | 0.72 | 0.171877 |
Target: 5'- gGCGCUGGGCgagcugUGCCCCCccggcaGCCGCGCgCGc -3' miRNA: 3'- -UGCGGUCCG------ACGGGGGc-----CGGCGUG-GC- -5' |
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31027 | 5' | -67.4 | NC_006560.1 | + | 10474 | 0.72 | 0.14834 |
Target: 5'- cACGCCgccucggggcccgGGGCggggGCCCCgucggguCGGCCGUACCa -3' miRNA: 3'- -UGCGG-------------UCCGa---CGGGG-------GCCGGCGUGGc -5' |
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31027 | 5' | -67.4 | NC_006560.1 | + | 35234 | 0.72 | 0.171877 |
Target: 5'- aACGCC-GGCgGCCgCC-GCCGCACCu -3' miRNA: 3'- -UGCGGuCCGaCGGgGGcCGGCGUGGc -5' |
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31027 | 5' | -67.4 | NC_006560.1 | + | 42978 | 0.72 | 0.163941 |
Target: 5'- aGCGCgCAGGUagGCCUCCGcGaCCGCGCCc -3' miRNA: 3'- -UGCG-GUCCGa-CGGGGGC-C-GGCGUGGc -5' |
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31027 | 5' | -67.4 | NC_006560.1 | + | 133972 | 0.72 | 0.167867 |
Target: 5'- -gGCCGcGGCgccccCCCCCGGCuCGCGCCc -3' miRNA: 3'- ugCGGU-CCGac---GGGGGCCG-GCGUGGc -5' |
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31027 | 5' | -67.4 | NC_006560.1 | + | 119501 | 0.72 | 0.149051 |
Target: 5'- cUGCCGGGaggUGCCUCCgGGCCGCgggGCCGc -3' miRNA: 3'- uGCGGUCCg--ACGGGGG-CCGGCG---UGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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