miRNA display CGI


Results 61 - 80 of 417 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31027 5' -67.4 NC_006560.1 + 18961 0.72 0.152654
Target:  5'- gGCGCCGGGC-GUCgCgGGCCGCgacGCCGc -3'
miRNA:   3'- -UGCGGUCCGaCGGgGgCCGGCG---UGGC- -5'
31027 5' -67.4 NC_006560.1 + 144890 0.72 0.152654
Target:  5'- aGCGCCcauGUUcUCCCCGGCCGCGCCc -3'
miRNA:   3'- -UGCGGuc-CGAcGGGGGCCGGCGUGGc -5'
31027 5' -67.4 NC_006560.1 + 79859 0.72 0.152654
Target:  5'- -aGCCGGGCcGCCCCCGcCCcCGCCa -3'
miRNA:   3'- ugCGGUCCGaCGGGGGCcGGcGUGGc -5'
31027 5' -67.4 NC_006560.1 + 106565 0.72 0.156336
Target:  5'- uACGCCGGGUUccucggggGCCggggCCUGGCCGCcCCGg -3'
miRNA:   3'- -UGCGGUCCGA--------CGG----GGGCCGGCGuGGC- -5'
31027 5' -67.4 NC_006560.1 + 39666 0.72 0.156336
Target:  5'- -gGCCGcGGCcgcGCCCCgGGCCGCcCCGc -3'
miRNA:   3'- ugCGGU-CCGa--CGGGGgCCGGCGuGGC- -5'
31027 5' -67.4 NC_006560.1 + 149268 0.72 0.156336
Target:  5'- cCGCCGGGCgccuccCCCUCGGCCcGCcCCGg -3'
miRNA:   3'- uGCGGUCCGac----GGGGGCCGG-CGuGGC- -5'
31027 5' -67.4 NC_006560.1 + 125495 0.72 0.156336
Target:  5'- uGCGCCugGGGgacGCCCCCGccuCCGCGCCGg -3'
miRNA:   3'- -UGCGG--UCCga-CGGGGGCc--GGCGUGGC- -5'
31027 5' -67.4 NC_006560.1 + 56442 0.72 0.160098
Target:  5'- cGCGCCggggucgaggAGGCgGCCCUCGGC-GCGCCc -3'
miRNA:   3'- -UGCGG----------UCCGaCGGGGGCCGgCGUGGc -5'
31027 5' -67.4 NC_006560.1 + 91808 0.72 0.160098
Target:  5'- -gGCCGGGCagcgGCCCCCG-CCGagACCGg -3'
miRNA:   3'- ugCGGUCCGa---CGGGGGCcGGCg-UGGC- -5'
31027 5' -67.4 NC_006560.1 + 25063 0.72 0.160098
Target:  5'- cGCGCgAGGCggccGCCgCCGGCgCGC-CCGa -3'
miRNA:   3'- -UGCGgUCCGa---CGGgGGCCG-GCGuGGC- -5'
31027 5' -67.4 NC_006560.1 + 85440 0.72 0.163553
Target:  5'- uGCGCCAcGGCgUGCCCCggguccuCGGCCaGCuCCGa -3'
miRNA:   3'- -UGCGGU-CCG-ACGGGG-------GCCGG-CGuGGC- -5'
31027 5' -67.4 NC_006560.1 + 49910 0.72 0.163941
Target:  5'- uCGCCccGUUccGCCCCCGcccGCCGCGCCGa -3'
miRNA:   3'- uGCGGucCGA--CGGGGGC---CGGCGUGGC- -5'
31027 5' -67.4 NC_006560.1 + 42978 0.72 0.163941
Target:  5'- aGCGCgCAGGUagGCCUCCGcGaCCGCGCCc -3'
miRNA:   3'- -UGCG-GUCCGa-CGGGGGC-C-GGCGUGGc -5'
31027 5' -67.4 NC_006560.1 + 148679 0.72 0.163941
Target:  5'- gGCGCCguGGGCgGCCCCgGgGCCGCcguCCa -3'
miRNA:   3'- -UGCGG--UCCGaCGGGGgC-CGGCGu--GGc -5'
31027 5' -67.4 NC_006560.1 + 35013 0.72 0.163941
Target:  5'- -gGCCGGGC-GCCCCCuccGGuCCGcCGCCGc -3'
miRNA:   3'- ugCGGUCCGaCGGGGG---CC-GGC-GUGGC- -5'
31027 5' -67.4 NC_006560.1 + 136020 0.72 0.163941
Target:  5'- -gGCCgGGGCgaguuccgGgCCCUGGCCGCGCUGg -3'
miRNA:   3'- ugCGG-UCCGa-------CgGGGGCCGGCGUGGC- -5'
31027 5' -67.4 NC_006560.1 + 9168 0.72 0.16668
Target:  5'- aACGUCGGGC-GCCUCgGGCCcgcgacgggcgucaGCGCCGg -3'
miRNA:   3'- -UGCGGUCCGaCGGGGgCCGG--------------CGUGGC- -5'
31027 5' -67.4 NC_006560.1 + 88901 0.72 0.167867
Target:  5'- -gGCCGGGUcGCCggCCGGCCGUGCCu -3'
miRNA:   3'- ugCGGUCCGaCGGg-GGCCGGCGUGGc -5'
31027 5' -67.4 NC_006560.1 + 133972 0.72 0.167867
Target:  5'- -gGCCGcGGCgccccCCCCCGGCuCGCGCCc -3'
miRNA:   3'- ugCGGU-CCGac---GGGGGCCG-GCGUGGc -5'
31027 5' -67.4 NC_006560.1 + 35234 0.72 0.171877
Target:  5'- aACGCC-GGCgGCCgCC-GCCGCACCu -3'
miRNA:   3'- -UGCGGuCCGaCGGgGGcCGGCGUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.