miRNA display CGI


Results 81 - 100 of 417 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31027 5' -67.4 NC_006560.1 + 22710 0.72 0.171877
Target:  5'- gACGCCacGGGCcGCUUCaCGGCCGCGCgGc -3'
miRNA:   3'- -UGCGG--UCCGaCGGGG-GCCGGCGUGgC- -5'
31027 5' -67.4 NC_006560.1 + 130510 0.72 0.171877
Target:  5'- cGCGCCcGGCgGCCggCCGGUgGCGCCGc -3'
miRNA:   3'- -UGCGGuCCGaCGGg-GGCCGgCGUGGC- -5'
31027 5' -67.4 NC_006560.1 + 120189 0.72 0.171877
Target:  5'- gGCGCUGGGCgagcugUGCCCCCccggcaGCCGCGCgCGc -3'
miRNA:   3'- -UGCGGUCCG------ACGGGGGc-----CGGCGUG-GC- -5'
31027 5' -67.4 NC_006560.1 + 113659 0.71 0.175973
Target:  5'- cCGCgGGGCUGCgggagcuggCCCGGaCCGCGCCc -3'
miRNA:   3'- uGCGgUCCGACGg--------GGGCC-GGCGUGGc -5'
31027 5' -67.4 NC_006560.1 + 30741 0.71 0.175973
Target:  5'- cCGcCCAGGCccgGCCCCCGGCCcugacGCAggcCCa -3'
miRNA:   3'- uGC-GGUCCGa--CGGGGGCCGG-----CGU---GGc -5'
31027 5' -67.4 NC_006560.1 + 81540 0.71 0.175973
Target:  5'- cGCGCCAgGGC-GUgCUCGGCCGCGCg- -3'
miRNA:   3'- -UGCGGU-CCGaCGgGGGCCGGCGUGgc -5'
31027 5' -67.4 NC_006560.1 + 119142 0.71 0.175973
Target:  5'- cCGCCGGGCgacgacCUCCCGGCgCGCuucGCCGa -3'
miRNA:   3'- uGCGGUCCGac----GGGGGCCG-GCG---UGGC- -5'
31027 5' -67.4 NC_006560.1 + 1292 0.71 0.175973
Target:  5'- cGCGCCGGGCcGCCCggguuCCGcCCGCACgGc -3'
miRNA:   3'- -UGCGGUCCGaCGGG-----GGCcGGCGUGgC- -5'
31027 5' -67.4 NC_006560.1 + 37651 0.71 0.175973
Target:  5'- gACGCCgugcAGcGCguacucGCCCgcggauCCGGCCGCGCCGg -3'
miRNA:   3'- -UGCGG----UC-CGa-----CGGG------GGCCGGCGUGGC- -5'
31027 5' -67.4 NC_006560.1 + 124917 0.71 0.180155
Target:  5'- cCGCCAcGGCUGCcugagccccacCCCCGGCaCGCcCCu -3'
miRNA:   3'- uGCGGU-CCGACG-----------GGGGCCG-GCGuGGc -5'
31027 5' -67.4 NC_006560.1 + 22660 0.71 0.180155
Target:  5'- cCGCCGGGCgcagcgagcGCCgCCGcGCgCGCGCCGc -3'
miRNA:   3'- uGCGGUCCGa--------CGGgGGC-CG-GCGUGGC- -5'
31027 5' -67.4 NC_006560.1 + 130333 0.71 0.184425
Target:  5'- -gGCCGcGGC-GuCCCCCGccGCCGCGCCGc -3'
miRNA:   3'- ugCGGU-CCGaC-GGGGGC--CGGCGUGGC- -5'
31027 5' -67.4 NC_006560.1 + 50270 0.71 0.184425
Target:  5'- -gGCCGGGCUcggcgcGCCCCCGGggGUACCu -3'
miRNA:   3'- ugCGGUCCGA------CGGGGGCCggCGUGGc -5'
31027 5' -67.4 NC_006560.1 + 17183 0.71 0.184425
Target:  5'- cACGUgAGGCcGCCCaCCGGgCGCACg- -3'
miRNA:   3'- -UGCGgUCCGaCGGG-GGCCgGCGUGgc -5'
31027 5' -67.4 NC_006560.1 + 139067 0.71 0.188784
Target:  5'- gUGCCGGGCccgggggcgcGCCCugCCGGCCGUGCCc -3'
miRNA:   3'- uGCGGUCCGa---------CGGG--GGCCGGCGUGGc -5'
31027 5' -67.4 NC_006560.1 + 35382 0.71 0.188784
Target:  5'- uGCGCCacagggGGGgaGCUCCagCGGCCGgCGCCGg -3'
miRNA:   3'- -UGCGG------UCCgaCGGGG--GCCGGC-GUGGC- -5'
31027 5' -67.4 NC_006560.1 + 72595 0.71 0.188784
Target:  5'- cGCGCCAGcCUGCCgacucggacccgCCgGGCCGCGCgGc -3'
miRNA:   3'- -UGCGGUCcGACGG------------GGgCCGGCGUGgC- -5'
31027 5' -67.4 NC_006560.1 + 37694 0.71 0.192784
Target:  5'- gGCGCCGGGCcgcucuugaugGUCCCCgcgcugaacggacGGCCGCACa- -3'
miRNA:   3'- -UGCGGUCCGa----------CGGGGG-------------CCGGCGUGgc -5'
31027 5' -67.4 NC_006560.1 + 35593 0.71 0.192784
Target:  5'- uACGCCcGGCUcGCUgCCGGgaauccuCCGCGCCGc -3'
miRNA:   3'- -UGCGGuCCGA-CGGgGGCC-------GGCGUGGC- -5'
31027 5' -67.4 NC_006560.1 + 44500 0.71 0.193233
Target:  5'- gGCGCCucgucaAGGCccgGgCCCUGGCgCGCACCu -3'
miRNA:   3'- -UGCGG------UCCGa--CgGGGGCCG-GCGUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.