miRNA display CGI


Results 61 - 80 of 417 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31027 5' -67.4 NC_006560.1 + 19406 0.66 0.373547
Target:  5'- -gGCCGGGCgaGUCgCCgCGGCgGCGCuCGg -3'
miRNA:   3'- ugCGGUCCGa-CGG-GG-GCCGgCGUG-GC- -5'
31027 5' -67.4 NC_006560.1 + 19538 0.69 0.250711
Target:  5'- -aGCCcgGGGCguucuccuccggcgGCCCCCcggaGGCgGCACCGg -3'
miRNA:   3'- ugCGG--UCCGa-------------CGGGGG----CCGgCGUGGC- -5'
31027 5' -67.4 NC_006560.1 + 19910 0.66 0.421009
Target:  5'- gACGCCgcAGGCggucaGCCgCgCCGcguggguugauGCCGCGCCGc -3'
miRNA:   3'- -UGCGG--UCCGa----CGG-G-GGC-----------CGGCGUGGC- -5'
31027 5' -67.4 NC_006560.1 + 21012 0.67 0.343986
Target:  5'- gGCGgCGGGCccGCCCCgaaGGgCGgGCCGg -3'
miRNA:   3'- -UGCgGUCCGa-CGGGGg--CCgGCgUGGC- -5'
31027 5' -67.4 NC_006560.1 + 21048 0.68 0.302877
Target:  5'- gGCGCCcgcgcGGC-GUCCCCGGUCGC-CUa -3'
miRNA:   3'- -UGCGGu----CCGaCGGGGGCCGGCGuGGc -5'
31027 5' -67.4 NC_006560.1 + 21608 0.71 0.197774
Target:  5'- cGCGCCugcgcgcGGC-GCCgCCGGCCGCAUg- -3'
miRNA:   3'- -UGCGGu------CCGaCGGgGGCCGGCGUGgc -5'
31027 5' -67.4 NC_006560.1 + 21651 0.68 0.283783
Target:  5'- uCGaCGGGCggcGCCgCCGGCCGCAUg- -3'
miRNA:   3'- uGCgGUCCGa--CGGgGGCCGGCGUGgc -5'
31027 5' -67.4 NC_006560.1 + 21699 0.71 0.202408
Target:  5'- gGCGCCGccGGCcGCCCCCGcGCCccgggGCggaGCCGg -3'
miRNA:   3'- -UGCGGU--CCGaCGGGGGC-CGG-----CG---UGGC- -5'
31027 5' -67.4 NC_006560.1 + 21736 0.68 0.316146
Target:  5'- -gGCCGGGC-GCCgCCCGucGCCG-GCCGg -3'
miRNA:   3'- ugCGGUCCGaCGG-GGGC--CGGCgUGGC- -5'
31027 5' -67.4 NC_006560.1 + 22206 0.69 0.262143
Target:  5'- uCGCCGcGGCccGCCCCCGcGgccccggcccgggccCCGCGCCGc -3'
miRNA:   3'- uGCGGU-CCGa-CGGGGGC-C---------------GGCGUGGC- -5'
31027 5' -67.4 NC_006560.1 + 22374 0.7 0.216878
Target:  5'- gGCGaCGGGCaccccGCCCCCGGCuCGgACCc -3'
miRNA:   3'- -UGCgGUCCGa----CGGGGGCCG-GCgUGGc -5'
31027 5' -67.4 NC_006560.1 + 22483 0.68 0.316146
Target:  5'- aGCGCgAcGCgGCCCCC-GCCGgCGCCGc -3'
miRNA:   3'- -UGCGgUcCGaCGGGGGcCGGC-GUGGC- -5'
31027 5' -67.4 NC_006560.1 + 22619 0.67 0.336864
Target:  5'- cGCGCCGccGCcGCCgCgGGCCGcCGCCGa -3'
miRNA:   3'- -UGCGGUc-CGaCGGgGgCCGGC-GUGGC- -5'
31027 5' -67.4 NC_006560.1 + 22660 0.71 0.180155
Target:  5'- cCGCCGGGCgcagcgagcGCCgCCGcGCgCGCGCCGc -3'
miRNA:   3'- uGCGGUCCGa--------CGGgGGC-CG-GCGUGGC- -5'
31027 5' -67.4 NC_006560.1 + 22710 0.72 0.171877
Target:  5'- gACGCCacGGGCcGCUUCaCGGCCGCGCgGc -3'
miRNA:   3'- -UGCGG--UCCGaCGGGG-GCCGGCGUGgC- -5'
31027 5' -67.4 NC_006560.1 + 22921 0.7 0.207136
Target:  5'- cGCGCCGGcGCUacgagGCCgCCGGCgCGC-CCGc -3'
miRNA:   3'- -UGCGGUC-CGA-----CGGgGGCCG-GCGuGGC- -5'
31027 5' -67.4 NC_006560.1 + 23187 0.67 0.365997
Target:  5'- cCGCCGGGCgcuucgGCUggggCCUGGCCcaCGCCGc -3'
miRNA:   3'- uGCGGUCCGa-----CGG----GGGCCGGc-GUGGC- -5'
31027 5' -67.4 NC_006560.1 + 23257 0.66 0.381202
Target:  5'- cGCGCagaaGGGCUuccucgccGCCagCCUGcGCCGCGCCu -3'
miRNA:   3'- -UGCGg---UCCGA--------CGG--GGGC-CGGCGUGGc -5'
31027 5' -67.4 NC_006560.1 + 23299 0.66 0.396822
Target:  5'- cGCGCCccugcuGGCgcgcgagaacGCCgCCgCGGCCGgCGCCGc -3'
miRNA:   3'- -UGCGGu-----CCGa---------CGG-GG-GCCGGC-GUGGC- -5'
31027 5' -67.4 NC_006560.1 + 23357 0.77 0.067937
Target:  5'- gACGCCGccGCcGCCCCCGGCCuCGCCGg -3'
miRNA:   3'- -UGCGGUc-CGaCGGGGGCCGGcGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.