miRNA display CGI


Results 81 - 100 of 417 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31027 5' -67.4 NC_006560.1 + 23419 0.67 0.32985
Target:  5'- cCGCCuGGCgGCCgCCCucGCCGCcgACCGc -3'
miRNA:   3'- uGCGGuCCGaCGG-GGGc-CGGCG--UGGC- -5'
31027 5' -67.4 NC_006560.1 + 23615 0.68 0.277634
Target:  5'- cCGCCGcgcGGCgccGCCgcgCCCGcGCCGCGCCc -3'
miRNA:   3'- uGCGGU---CCGa--CGG---GGGC-CGGCGUGGc -5'
31027 5' -67.4 NC_006560.1 + 23651 0.66 0.373547
Target:  5'- cGCGCCuGGCUGCg--CGaGCUGCGCCu -3'
miRNA:   3'- -UGCGGuCCGACGgggGC-CGGCGUGGc -5'
31027 5' -67.4 NC_006560.1 + 23700 0.75 0.096224
Target:  5'- uGCGCCugcgcGGCgaccuccgcGUCCCCGGCgGCGCCGa -3'
miRNA:   3'- -UGCGGu----CCGa--------CGGGGGCCGgCGUGGC- -5'
31027 5' -67.4 NC_006560.1 + 23775 0.67 0.365997
Target:  5'- uCGCC-GGC-GCCgCCGcGCCGCugCu -3'
miRNA:   3'- uGCGGuCCGaCGGgGGC-CGGCGugGc -5'
31027 5' -67.4 NC_006560.1 + 24046 0.69 0.248475
Target:  5'- gACGCCGcccGCccgcGCCCCCGGCcCGCGgCGc -3'
miRNA:   3'- -UGCGGUc--CGa---CGGGGGCCG-GCGUgGC- -5'
31027 5' -67.4 NC_006560.1 + 24308 0.74 0.12593
Target:  5'- -aGCCGGGCUccggccgcGCCCUCgGGCCGCuCCGc -3'
miRNA:   3'- ugCGGUCCGA--------CGGGGG-CCGGCGuGGC- -5'
31027 5' -67.4 NC_006560.1 + 24340 0.67 0.32985
Target:  5'- nGCGCCucgg-GCCCgCUGcGCCGCGCCGc -3'
miRNA:   3'- -UGCGGuccgaCGGG-GGC-CGGCGUGGC- -5'
31027 5' -67.4 NC_006560.1 + 24661 0.69 0.265654
Target:  5'- -gGCCugcuGGCggccGCCgCCGGCCGcCGCCu -3'
miRNA:   3'- ugCGGu---CCGa---CGGgGGCCGGC-GUGGc -5'
31027 5' -67.4 NC_006560.1 + 24772 0.66 0.412848
Target:  5'- uGCGCCGuGCUGCCC---GCCGCGCa- -3'
miRNA:   3'- -UGCGGUcCGACGGGggcCGGCGUGgc -5'
31027 5' -67.4 NC_006560.1 + 24832 0.76 0.087164
Target:  5'- cGCGCCGuGCUcGCCUCCGGCCGCGucuucgggcCCGg -3'
miRNA:   3'- -UGCGGUcCGA-CGGGGGCCGGCGU---------GGC- -5'
31027 5' -67.4 NC_006560.1 + 25017 0.81 0.038974
Target:  5'- cGCGCCGuGCUGCCCgcgcucgaCGGCCGCGCCGc -3'
miRNA:   3'- -UGCGGUcCGACGGGg-------GCCGGCGUGGC- -5'
31027 5' -67.4 NC_006560.1 + 25063 0.72 0.160098
Target:  5'- cGCGCgAGGCggccGCCgCCGGCgCGC-CCGa -3'
miRNA:   3'- -UGCGgUCCGa---CGGgGGCCG-GCGuGGC- -5'
31027 5' -67.4 NC_006560.1 + 25194 0.74 0.114254
Target:  5'- cGCGCCGGGCccgagGCCCugCCcGCCGCGCUGc -3'
miRNA:   3'- -UGCGGUCCGa----CGGG--GGcCGGCGUGGC- -5'
31027 5' -67.4 NC_006560.1 + 25242 0.66 0.421009
Target:  5'- cGCGCCcuGCccgaGCcggaCCCCGacGCCGCGCCGc -3'
miRNA:   3'- -UGCGGucCGa---CG----GGGGC--CGGCGUGGC- -5'
31027 5' -67.4 NC_006560.1 + 25287 0.7 0.232224
Target:  5'- cGCGCCGacGCcggGCCCCCGGaCCcCGCCGc -3'
miRNA:   3'- -UGCGGUc-CGa--CGGGGGCC-GGcGUGGC- -5'
31027 5' -67.4 NC_006560.1 + 25324 0.79 0.051511
Target:  5'- cGCGCguGcGCUggGCCgCCGGCCGCGCCGa -3'
miRNA:   3'- -UGCGguC-CGA--CGGgGGCCGGCGUGGC- -5'
31027 5' -67.4 NC_006560.1 + 25384 0.68 0.316146
Target:  5'- cCGCCcuGGaGCUGgCCCCGGCCccgaGCcCCGc -3'
miRNA:   3'- uGCGG--UC-CGACgGGGGCCGG----CGuGGC- -5'
31027 5' -67.4 NC_006560.1 + 26230 0.71 0.193233
Target:  5'- cCGCCAGGaa-CCCCggaGGCCGgGCCGg -3'
miRNA:   3'- uGCGGUCCgacGGGGg--CCGGCgUGGC- -5'
31027 5' -67.4 NC_006560.1 + 26394 0.69 0.242956
Target:  5'- gGCGCagGGGCgcGCCCCCGGgCGUGCa- -3'
miRNA:   3'- -UGCGg-UCCGa-CGGGGGCCgGCGUGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.