miRNA display CGI


Results 21 - 40 of 417 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31027 5' -67.4 NC_006560.1 + 145131 0.67 0.334748
Target:  5'- uGCGggGGGCUcugGCCCCCgccccccuggggggGGCCGCACUc -3'
miRNA:   3'- -UGCggUCCGA---CGGGGG--------------CCGGCGUGGc -5'
31027 5' -67.4 NC_006560.1 + 145056 0.73 0.138703
Target:  5'- cCGCCGGGCgGCCUCCuccccugggcggGGCCGgGCCu -3'
miRNA:   3'- uGCGGUCCGaCGGGGG------------CCGGCgUGGc -5'
31027 5' -67.4 NC_006560.1 + 145003 0.75 0.103596
Target:  5'- cGCGCCcucGGGCggaGCCCCCGGCCccggcccucuGgGCCGa -3'
miRNA:   3'- -UGCGG---UCCGa--CGGGGGCCGG----------CgUGGC- -5'
31027 5' -67.4 NC_006560.1 + 144965 0.68 0.302877
Target:  5'- cGCGCCGGGCcccGCCCCCccgacGGaccCCGgGCCc -3'
miRNA:   3'- -UGCGGUCCGa--CGGGGG-----CC---GGCgUGGc -5'
31027 5' -67.4 NC_006560.1 + 144890 0.72 0.152654
Target:  5'- aGCGCCcauGUUcUCCCCGGCCGCGCCc -3'
miRNA:   3'- -UGCGGuc-CGAcGGGGGCCGGCGUGGc -5'
31027 5' -67.4 NC_006560.1 + 144854 0.67 0.32985
Target:  5'- cUGCCcgggGGGCUGCCCgCCGcCCGCgugGCCc -3'
miRNA:   3'- uGCGG----UCCGACGGG-GGCcGGCG---UGGc -5'
31027 5' -67.4 NC_006560.1 + 144765 0.66 0.407998
Target:  5'- cCGCCGGcggcgacggcccccuGCcccucgGCCCCCGGCgGCuACCc -3'
miRNA:   3'- uGCGGUC---------------CGa-----CGGGGGCCGgCG-UGGc -5'
31027 5' -67.4 NC_006560.1 + 144487 0.68 0.277634
Target:  5'- uCGCCGGcCUGCCCCgucugccccgCGGCCGCcuuccCCGc -3'
miRNA:   3'- uGCGGUCcGACGGGG----------GCCGGCGu----GGC- -5'
31027 5' -67.4 NC_006560.1 + 144292 0.68 0.309457
Target:  5'- cCGCC-GGC-GCuCCCCGcCCGCGCCc -3'
miRNA:   3'- uGCGGuCCGaCG-GGGGCcGGCGUGGc -5'
31027 5' -67.4 NC_006560.1 + 144223 0.67 0.336864
Target:  5'- cUGCC-GGCgGCCCCCcGCCGCcucuCCu -3'
miRNA:   3'- uGCGGuCCGaCGGGGGcCGGCGu---GGc -5'
31027 5' -67.4 NC_006560.1 + 144040 0.76 0.078919
Target:  5'- cCGCCGGGCUcgccuaagcgGCCCgCGGCCGCccCCGg -3'
miRNA:   3'- uGCGGUCCGA----------CGGGgGCCGGCGu-GGC- -5'
31027 5' -67.4 NC_006560.1 + 143126 0.68 0.296404
Target:  5'- cCGCCGGucucuccccgucGCgcaCCCCCGGCCGCcCCc -3'
miRNA:   3'- uGCGGUC------------CGac-GGGGGCCGGCGuGGc -5'
31027 5' -67.4 NC_006560.1 + 143077 0.67 0.336864
Target:  5'- uGCGaCCuccGC-GCCCCCGaGCCGCGCgGc -3'
miRNA:   3'- -UGC-GGuc-CGaCGGGGGC-CGGCGUGgC- -5'
31027 5' -67.4 NC_006560.1 + 142976 0.68 0.296404
Target:  5'- cCGCCGcGGCgagcGaCCCCCGGCCcgagagagcCACCGa -3'
miRNA:   3'- uGCGGU-CCGa---C-GGGGGCCGGc--------GUGGC- -5'
31027 5' -67.4 NC_006560.1 + 142892 0.68 0.296404
Target:  5'- cUGUCG---UGgCCCCGGCCGCGCCGc -3'
miRNA:   3'- uGCGGUccgACgGGGGCCGGCGUGGC- -5'
31027 5' -67.4 NC_006560.1 + 142519 0.73 0.129017
Target:  5'- gGCGCCcccgGGGCgggGCCCCgGGCCcgGCgGCCGg -3'
miRNA:   3'- -UGCGG----UCCGa--CGGGGgCCGG--CG-UGGC- -5'
31027 5' -67.4 NC_006560.1 + 142357 0.67 0.32985
Target:  5'- cGCGCCucgggggccggGGGCggcgGCCUCCGGgaGgGCCGa -3'
miRNA:   3'- -UGCGG-----------UCCGa---CGGGGGCCggCgUGGC- -5'
31027 5' -67.4 NC_006560.1 + 141562 0.68 0.309457
Target:  5'- aACGCCggcGGGCccgGCucgaCCCCGGCgGCGgCGg -3'
miRNA:   3'- -UGCGG---UCCGa--CG----GGGGCCGgCGUgGC- -5'
31027 5' -67.4 NC_006560.1 + 140284 0.66 0.404785
Target:  5'- -gGCC-GGCggggguaucGUCCagucccagcgCCGGCCGCGCCGg -3'
miRNA:   3'- ugCGGuCCGa--------CGGG----------GGCCGGCGUGGC- -5'
31027 5' -67.4 NC_006560.1 + 140019 0.66 0.396822
Target:  5'- aACGCgAGGCcGUgggCCUGGCCGgGCUGg -3'
miRNA:   3'- -UGCGgUCCGaCGg--GGGCCGGCgUGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.