miRNA display CGI


Results 41 - 60 of 417 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31027 5' -67.4 NC_006560.1 + 139314 0.66 0.396031
Target:  5'- gGCGCCucgggcgcgggagAGGCggGCgCCUCGGCgGC-CCGc -3'
miRNA:   3'- -UGCGG-------------UCCGa-CG-GGGGCCGgCGuGGC- -5'
31027 5' -67.4 NC_006560.1 + 139067 0.71 0.188784
Target:  5'- gUGCCGGGCccgggggcgcGCCCugCCGGCCGUGCCc -3'
miRNA:   3'- uGCGGUCCGa---------CGGG--GGCCGGCGUGGc -5'
31027 5' -67.4 NC_006560.1 + 138184 0.69 0.265654
Target:  5'- cGCGCCaucgcgucccgGGGCUGCCUgCGGCaCGaCGCUc -3'
miRNA:   3'- -UGCGG-----------UCCGACGGGgGCCG-GC-GUGGc -5'
31027 5' -67.4 NC_006560.1 + 136244 0.69 0.242956
Target:  5'- -gGCCGGGCUGCgaCCCGuGCUGguCUGc -3'
miRNA:   3'- ugCGGUCCGACGg-GGGC-CGGCguGGC- -5'
31027 5' -67.4 NC_006560.1 + 136020 0.72 0.163941
Target:  5'- -gGCCgGGGCgaguuccgGgCCCUGGCCGCGCUGg -3'
miRNA:   3'- ugCGG-UCCGa-------CgGGGGCCGGCGUGGC- -5'
31027 5' -67.4 NC_006560.1 + 135590 0.69 0.254097
Target:  5'- cCGCgCGGGUg--CCCCGGCCGCAgUGg -3'
miRNA:   3'- uGCG-GUCCGacgGGGGCCGGCGUgGC- -5'
31027 5' -67.4 NC_006560.1 + 135451 0.7 0.237539
Target:  5'- aGCGCCucGCcGCCCCCGGagcaGcCGCCGg -3'
miRNA:   3'- -UGCGGucCGaCGGGGGCCgg--C-GUGGC- -5'
31027 5' -67.4 NC_006560.1 + 134458 0.66 0.404785
Target:  5'- gGCG-CGGGCgGCCCCCgcgGGCCcGCGguccCCGu -3'
miRNA:   3'- -UGCgGUCCGaCGGGGG---CCGG-CGU----GGC- -5'
31027 5' -67.4 NC_006560.1 + 134235 0.67 0.358554
Target:  5'- cCGCCGcgcGGCccGCCCCCgcGGCCcGC-CCGa -3'
miRNA:   3'- uGCGGU---CCGa-CGGGGG--CCGG-CGuGGC- -5'
31027 5' -67.4 NC_006560.1 + 133972 0.72 0.167867
Target:  5'- -gGCCGcGGCgccccCCCCCGGCuCGCGCCc -3'
miRNA:   3'- ugCGGU-CCGac---GGGGGCCG-GCGUGGc -5'
31027 5' -67.4 NC_006560.1 + 133487 0.67 0.351216
Target:  5'- gGCGUCuacGGGCgaGCgCgagCGGCCGCGCCGg -3'
miRNA:   3'- -UGCGG---UCCGa-CGgGg--GCCGGCGUGGC- -5'
31027 5' -67.4 NC_006560.1 + 133322 0.66 0.396822
Target:  5'- aGCGCCugguGGCUGauggCCUCGGC-GaCGCCGa -3'
miRNA:   3'- -UGCGGu---CCGACg---GGGGCCGgC-GUGGC- -5'
31027 5' -67.4 NC_006560.1 + 132613 0.7 0.211959
Target:  5'- -gGCCGGcGCggaaGUCCUCGGCCGCccaGCCGc -3'
miRNA:   3'- ugCGGUC-CGa---CGGGGGCCGGCG---UGGC- -5'
31027 5' -67.4 NC_006560.1 + 132021 0.66 0.381202
Target:  5'- gACcCCGGaGacacGCCCCCGGCCGCcgcGCUGc -3'
miRNA:   3'- -UGcGGUC-Cga--CGGGGGCCGGCG---UGGC- -5'
31027 5' -67.4 NC_006560.1 + 131614 0.68 0.29004
Target:  5'- gGCGCCGccggcccggcGGCggucgagcGCgCCCGcGCCGCGCUGg -3'
miRNA:   3'- -UGCGGU----------CCGa-------CGgGGGC-CGGCGUGGC- -5'
31027 5' -67.4 NC_006560.1 + 131229 0.7 0.211959
Target:  5'- gACGCCgGGGCUGCggcugcuggacCCaCCGGCUGuCAUCGg -3'
miRNA:   3'- -UGCGG-UCCGACG-----------GG-GGCCGGC-GUGGC- -5'
31027 5' -67.4 NC_006560.1 + 131190 0.78 0.064615
Target:  5'- gGCGCCcGGCcgccUGUCCCCGGCgcUGCGCCGg -3'
miRNA:   3'- -UGCGGuCCG----ACGGGGGCCG--GCGUGGC- -5'
31027 5' -67.4 NC_006560.1 + 131107 0.67 0.358554
Target:  5'- cACGCCgagcuggcggGGGCcugGCCCgCGGCCGgGgCGc -3'
miRNA:   3'- -UGCGG----------UCCGa--CGGGgGCCGGCgUgGC- -5'
31027 5' -67.4 NC_006560.1 + 130790 0.66 0.421009
Target:  5'- uGCGCgAGGCgGUgCUgCGGCCGCgggGCCa -3'
miRNA:   3'- -UGCGgUCCGaCGgGG-GCCGGCG---UGGc -5'
31027 5' -67.4 NC_006560.1 + 130510 0.72 0.171877
Target:  5'- cGCGCCcGGCgGCCggCCGGUgGCGCCGc -3'
miRNA:   3'- -UGCGGuCCGaCGGg-GGCCGgCGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.