miRNA display CGI


Results 61 - 80 of 417 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31027 5' -67.4 NC_006560.1 + 130333 0.71 0.184425
Target:  5'- -gGCCGcGGC-GuCCCCCGccGCCGCGCCGc -3'
miRNA:   3'- ugCGGU-CCGaC-GGGGGC--CGGCGUGGC- -5'
31027 5' -67.4 NC_006560.1 + 130156 0.75 0.093879
Target:  5'- -gGCCuGGCUGCCCCCGaggacCCGCgACCGc -3'
miRNA:   3'- ugCGGuCCGACGGGGGCc----GGCG-UGGC- -5'
31027 5' -67.4 NC_006560.1 + 129615 0.67 0.343986
Target:  5'- gACGCCcuaagcGGCcGCCCcgCCGGCgGgGCCGu -3'
miRNA:   3'- -UGCGGu-----CCGaCGGG--GGCCGgCgUGGC- -5'
31027 5' -67.4 NC_006560.1 + 128734 0.7 0.216878
Target:  5'- cACGUCGuGGC-GCCCgCGGCCGCugGCCc -3'
miRNA:   3'- -UGCGGU-CCGaCGGGgGCCGGCG--UGGc -5'
31027 5' -67.4 NC_006560.1 + 127472 0.66 0.412848
Target:  5'- cACGCCgcgcgcgagacGGGCUcgccGCCCgCGGgCGCGgCGg -3'
miRNA:   3'- -UGCGG-----------UCCGA----CGGGgGCCgGCGUgGC- -5'
31027 5' -67.4 NC_006560.1 + 125543 0.69 0.259823
Target:  5'- cCGCCGGGgcguccaucCUGCCCgaCCaGGCCGUGCCc -3'
miRNA:   3'- uGCGGUCC---------GACGGG--GG-CCGGCGUGGc -5'
31027 5' -67.4 NC_006560.1 + 125495 0.72 0.156336
Target:  5'- uGCGCCugGGGgacGCCCCCGccuCCGCGCCGg -3'
miRNA:   3'- -UGCGG--UCCga-CGGGGGCc--GGCGUGGC- -5'
31027 5' -67.4 NC_006560.1 + 124917 0.71 0.180155
Target:  5'- cCGCCAcGGCUGCcugagccccacCCCCGGCaCGCcCCu -3'
miRNA:   3'- uGCGGU-CCGACG-----------GGGGCCG-GCGuGGc -5'
31027 5' -67.4 NC_006560.1 + 124785 0.66 0.410419
Target:  5'- -gGCCGGGCggcGCUucguguucugcgagCCCGGCgaCGCGCCc -3'
miRNA:   3'- ugCGGUCCGa--CGG--------------GGGCCG--GCGUGGc -5'
31027 5' -67.4 NC_006560.1 + 124059 0.66 0.412848
Target:  5'- cCGCCucccccCcGuCCCCCGGCCGC-CCGg -3'
miRNA:   3'- uGCGGucc---GaC-GGGGGCCGGCGuGGC- -5'
31027 5' -67.4 NC_006560.1 + 124023 0.66 0.412848
Target:  5'- -gGCCcgacGGcCUGCCCCUcGCCGCcgucuACCGa -3'
miRNA:   3'- ugCGGu---CC-GACGGGGGcCGGCG-----UGGC- -5'
31027 5' -67.4 NC_006560.1 + 123973 0.69 0.259823
Target:  5'- gGCGCCGGGCcGCgaaCCCCGcgaccCCGC-CCGg -3'
miRNA:   3'- -UGCGGUCCGaCG---GGGGCc----GGCGuGGC- -5'
31027 5' -67.4 NC_006560.1 + 123575 0.66 0.412848
Target:  5'- uCGacaaCAGGCUGUcgcccgacuucgCCCUGGCCGUccuggcguACCGg -3'
miRNA:   3'- uGCg---GUCCGACG------------GGGGCCGGCG--------UGGC- -5'
31027 5' -67.4 NC_006560.1 + 121873 0.67 0.32985
Target:  5'- cGCGCCgAGGUcgaucgGCgUCCCGGC-GCGCCGc -3'
miRNA:   3'- -UGCGG-UCCGa-----CG-GGGGCCGgCGUGGC- -5'
31027 5' -67.4 NC_006560.1 + 121435 0.67 0.358554
Target:  5'- uGCGCUgGGGCacgacGuCCCCCGGCgCGCACg- -3'
miRNA:   3'- -UGCGG-UCCGa----C-GGGGGCCG-GCGUGgc -5'
31027 5' -67.4 NC_006560.1 + 120189 0.72 0.171877
Target:  5'- gGCGCUGGGCgagcugUGCCCCCccggcaGCCGCGCgCGc -3'
miRNA:   3'- -UGCGGUCCG------ACGGGGGc-----CGGCGUG-GC- -5'
31027 5' -67.4 NC_006560.1 + 119851 0.7 0.231698
Target:  5'- cGCGCCcuGCgccUGCCCCCGGgCGCcuucuucGCCa -3'
miRNA:   3'- -UGCGGucCG---ACGGGGGCCgGCG-------UGGc -5'
31027 5' -67.4 NC_006560.1 + 119775 0.68 0.309457
Target:  5'- gUGCCGGGUggcggUGCCCCCGcCCGacccCCGg -3'
miRNA:   3'- uGCGGUCCG-----ACGGGGGCcGGCgu--GGC- -5'
31027 5' -67.4 NC_006560.1 + 119583 0.69 0.24241
Target:  5'- aGCGCCcGGCcccgcccUGCuCCCCGGCgGgGCCc -3'
miRNA:   3'- -UGCGGuCCG-------ACG-GGGGCCGgCgUGGc -5'
31027 5' -67.4 NC_006560.1 + 119501 0.72 0.149051
Target:  5'- cUGCCGGGaggUGCCUCCgGGCCGCgggGCCGc -3'
miRNA:   3'- uGCGGUCCg--ACGGGGG-CCGGCG---UGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.