Results 41 - 60 of 417 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31027 | 5' | -67.4 | NC_006560.1 | + | 25242 | 0.66 | 0.421009 |
Target: 5'- cGCGCCcuGCccgaGCcggaCCCCGacGCCGCGCCGc -3' miRNA: 3'- -UGCGGucCGa---CG----GGGGC--CGGCGUGGC- -5' |
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31027 | 5' | -67.4 | NC_006560.1 | + | 40311 | 0.66 | 0.421009 |
Target: 5'- cGCGCUugggcGGGCgcgGCCCCUucuccggcccgGGCgGgGCCGa -3' miRNA: 3'- -UGCGG-----UCCGa--CGGGGG-----------CCGgCgUGGC- -5' |
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31027 | 5' | -67.4 | NC_006560.1 | + | 48116 | 0.66 | 0.421009 |
Target: 5'- gACGCCGcGacgGCCCCgaGGCCGUacGCCa -3' miRNA: 3'- -UGCGGUcCga-CGGGGg-CCGGCG--UGGc -5' |
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31027 | 5' | -67.4 | NC_006560.1 | + | 99331 | 0.66 | 0.421009 |
Target: 5'- cGCGCCGacGGCcgccGCCUCCcaCUGCGCCGg -3' miRNA: 3'- -UGCGGU--CCGa---CGGGGGccGGCGUGGC- -5' |
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31027 | 5' | -67.4 | NC_006560.1 | + | 112336 | 0.66 | 0.421009 |
Target: 5'- aACGCCcacCUGCCCuUCGaGCUGCACCc -3' miRNA: 3'- -UGCGGuccGACGGG-GGC-CGGCGUGGc -5' |
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31027 | 5' | -67.4 | NC_006560.1 | + | 96941 | 0.66 | 0.412848 |
Target: 5'- aGCGCgaccucucgaCGGGCcGCCgCgCC-GCCGCGCCGg -3' miRNA: 3'- -UGCG----------GUCCGaCGG-G-GGcCGGCGUGGC- -5' |
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31027 | 5' | -67.4 | NC_006560.1 | + | 85857 | 0.66 | 0.412848 |
Target: 5'- cGCGCCcgaAGGCgucgaGCCCcgCCGGCaggggguGCGCCa -3' miRNA: 3'- -UGCGG---UCCGa----CGGG--GGCCGg------CGUGGc -5' |
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31027 | 5' | -67.4 | NC_006560.1 | + | 124785 | 0.66 | 0.410419 |
Target: 5'- -gGCCGGGCggcGCUucguguucugcgagCCCGGCgaCGCGCCc -3' miRNA: 3'- ugCGGUCCGa--CGG--------------GGGCCG--GCGUGGc -5' |
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31027 | 5' | -67.4 | NC_006560.1 | + | 123575 | 0.66 | 0.412848 |
Target: 5'- uCGacaaCAGGCUGUcgcccgacuucgCCCUGGCCGUccuggcguACCGg -3' miRNA: 3'- uGCg---GUCCGACG------------GGGGCCGGCG--------UGGC- -5' |
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31027 | 5' | -67.4 | NC_006560.1 | + | 52227 | 0.66 | 0.412848 |
Target: 5'- -gGCUGGcgaGCUGCcuggCCCCGGCCggcgcggcGCACCGc -3' miRNA: 3'- ugCGGUC---CGACG----GGGGCCGG--------CGUGGC- -5' |
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31027 | 5' | -67.4 | NC_006560.1 | + | 71847 | 0.66 | 0.412848 |
Target: 5'- uCGCgGGGCcuggGCCCggCGGCCGCugUc -3' miRNA: 3'- uGCGgUCCGa---CGGGg-GCCGGCGugGc -5' |
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31027 | 5' | -67.4 | NC_006560.1 | + | 124023 | 0.66 | 0.412848 |
Target: 5'- -gGCCcgacGGcCUGCCCCUcGCCGCcgucuACCGa -3' miRNA: 3'- ugCGGu---CC-GACGGGGGcCGGCG-----UGGC- -5' |
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31027 | 5' | -67.4 | NC_006560.1 | + | 124059 | 0.66 | 0.412848 |
Target: 5'- cCGCCucccccCcGuCCCCCGGCCGC-CCGg -3' miRNA: 3'- uGCGGucc---GaC-GGGGGCCGGCGuGGC- -5' |
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31027 | 5' | -67.4 | NC_006560.1 | + | 3872 | 0.66 | 0.412848 |
Target: 5'- cCGCCAGGCa-CUCCgCGGCgGCGUCGg -3' miRNA: 3'- uGCGGUCCGacGGGG-GCCGgCGUGGC- -5' |
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31027 | 5' | -67.4 | NC_006560.1 | + | 24772 | 0.66 | 0.412848 |
Target: 5'- uGCGCCGuGCUGCCC---GCCGCGCa- -3' miRNA: 3'- -UGCGGUcCGACGGGggcCGGCGUGgc -5' |
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31027 | 5' | -67.4 | NC_006560.1 | + | 53294 | 0.66 | 0.412848 |
Target: 5'- aGCGCCAGGagcGCUUCU-GUCGCGCCa -3' miRNA: 3'- -UGCGGUCCga-CGGGGGcCGGCGUGGc -5' |
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31027 | 5' | -67.4 | NC_006560.1 | + | 63841 | 0.66 | 0.412848 |
Target: 5'- aGCGCCGGGCcuccucGCCCgCCaGCaCGC-CCu -3' miRNA: 3'- -UGCGGUCCGa-----CGGG-GGcCG-GCGuGGc -5' |
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31027 | 5' | -67.4 | NC_006560.1 | + | 95097 | 0.66 | 0.412848 |
Target: 5'- -gGCCGGGCcGCCgCCGacguccGCgaGCGCCGg -3' miRNA: 3'- ugCGGUCCGaCGGgGGC------CGg-CGUGGC- -5' |
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31027 | 5' | -67.4 | NC_006560.1 | + | 107885 | 0.66 | 0.412848 |
Target: 5'- cCGUCAGGCggGCgaCCCggguGGCCGCGgCCa -3' miRNA: 3'- uGCGGUCCGa-CGg-GGG----CCGGCGU-GGc -5' |
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31027 | 5' | -67.4 | NC_006560.1 | + | 148407 | 0.66 | 0.412848 |
Target: 5'- gACGCgGGGC-GCUCCgGGC-GgGCCGg -3' miRNA: 3'- -UGCGgUCCGaCGGGGgCCGgCgUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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