miRNA display CGI


Results 61 - 80 of 417 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31027 5' -67.4 NC_006560.1 + 63841 0.66 0.412848
Target:  5'- aGCGCCGGGCcuccucGCCCgCCaGCaCGC-CCu -3'
miRNA:   3'- -UGCGGUCCGa-----CGGG-GGcCG-GCGuGGc -5'
31027 5' -67.4 NC_006560.1 + 53294 0.66 0.412848
Target:  5'- aGCGCCAGGagcGCUUCU-GUCGCGCCa -3'
miRNA:   3'- -UGCGGUCCga-CGGGGGcCGGCGUGGc -5'
31027 5' -67.4 NC_006560.1 + 111351 0.66 0.404785
Target:  5'- gGCGCCuGGCcacgcgcgUGgCCCgGGCCaCGCUGg -3'
miRNA:   3'- -UGCGGuCCG--------ACgGGGgCCGGcGUGGC- -5'
31027 5' -67.4 NC_006560.1 + 89300 0.66 0.404785
Target:  5'- aAUGCC-GGCcGUUCCCGGCgGgACCu -3'
miRNA:   3'- -UGCGGuCCGaCGGGGGCCGgCgUGGc -5'
31027 5' -67.4 NC_006560.1 + 48578 0.66 0.404785
Target:  5'- cGCGCCAGcacgcggcaGCUGCaCCgCCaGGCgGCGCUc -3'
miRNA:   3'- -UGCGGUC---------CGACG-GG-GG-CCGgCGUGGc -5'
31027 5' -67.4 NC_006560.1 + 44064 0.66 0.404785
Target:  5'- aGCGCCAGGCU-CCgCUCGuagCGCGCCu -3'
miRNA:   3'- -UGCGGUCCGAcGG-GGGCcg-GCGUGGc -5'
31027 5' -67.4 NC_006560.1 + 26929 0.66 0.404785
Target:  5'- cCGCCGGGgaGgCCgCggGGCCGCggagGCCGg -3'
miRNA:   3'- uGCGGUCCgaCgGGgG--CCGGCG----UGGC- -5'
31027 5' -67.4 NC_006560.1 + 145232 0.66 0.404785
Target:  5'- gGCGCCccggGGGagcccgcaGCCCCCGGCCccgugggggaGCcCCGg -3'
miRNA:   3'- -UGCGG----UCCga------CGGGGGCCGG----------CGuGGC- -5'
31027 5' -67.4 NC_006560.1 + 140284 0.66 0.404785
Target:  5'- -gGCC-GGCggggguaucGUCCagucccagcgCCGGCCGCGCCGg -3'
miRNA:   3'- ugCGGuCCGa--------CGGG----------GGCCGGCGUGGC- -5'
31027 5' -67.4 NC_006560.1 + 73859 0.66 0.404785
Target:  5'- aGCGCCaAGGC-GCUgCUGGCCGgggaCGCCc -3'
miRNA:   3'- -UGCGG-UCCGaCGGgGGCCGGC----GUGGc -5'
31027 5' -67.4 NC_006560.1 + 31164 0.66 0.407998
Target:  5'- -gGCCucGCUGCCCgcgccccccgacgcgCCGGCcCGC-CCGg -3'
miRNA:   3'- ugCGGucCGACGGG---------------GGCCG-GCGuGGC- -5'
31027 5' -67.4 NC_006560.1 + 144765 0.66 0.407998
Target:  5'- cCGCCGGcggcgacggcccccuGCcccucgGCCCCCGGCgGCuACCc -3'
miRNA:   3'- uGCGGUC---------------CGa-----CGGGGGCCGgCG-UGGc -5'
31027 5' -67.4 NC_006560.1 + 24772 0.66 0.412848
Target:  5'- uGCGCCGuGCUGCCC---GCCGCGCa- -3'
miRNA:   3'- -UGCGGUcCGACGGGggcCGGCGUGgc -5'
31027 5' -67.4 NC_006560.1 + 3872 0.66 0.412848
Target:  5'- cCGCCAGGCa-CUCCgCGGCgGCGUCGg -3'
miRNA:   3'- uGCGGUCCGacGGGG-GCCGgCGUGGC- -5'
31027 5' -67.4 NC_006560.1 + 124059 0.66 0.412848
Target:  5'- cCGCCucccccCcGuCCCCCGGCCGC-CCGg -3'
miRNA:   3'- uGCGGucc---GaC-GGGGGCCGGCGuGGC- -5'
31027 5' -67.4 NC_006560.1 + 124023 0.66 0.412848
Target:  5'- -gGCCcgacGGcCUGCCCCUcGCCGCcgucuACCGa -3'
miRNA:   3'- ugCGGu---CC-GACGGGGGcCGGCG-----UGGC- -5'
31027 5' -67.4 NC_006560.1 + 71847 0.66 0.412848
Target:  5'- uCGCgGGGCcuggGCCCggCGGCCGCugUc -3'
miRNA:   3'- uGCGgUCCGa---CGGGg-GCCGGCGugGc -5'
31027 5' -67.4 NC_006560.1 + 52227 0.66 0.412848
Target:  5'- -gGCUGGcgaGCUGCcuggCCCCGGCCggcgcggcGCACCGc -3'
miRNA:   3'- ugCGGUC---CGACG----GGGGCCGG--------CGUGGC- -5'
31027 5' -67.4 NC_006560.1 + 123575 0.66 0.412848
Target:  5'- uCGacaaCAGGCUGUcgcccgacuucgCCCUGGCCGUccuggcguACCGg -3'
miRNA:   3'- uGCg---GUCCGACG------------GGGGCCGGCG--------UGGC- -5'
31027 5' -67.4 NC_006560.1 + 124785 0.66 0.410419
Target:  5'- -gGCCGGGCggcGCUucguguucugcgagCCCGGCgaCGCGCCc -3'
miRNA:   3'- ugCGGUCCGa--CGG--------------GGGCCG--GCGUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.