Results 81 - 100 of 417 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31027 | 5' | -67.4 | NC_006560.1 | + | 134458 | 0.66 | 0.404785 |
Target: 5'- gGCG-CGGGCgGCCCCCgcgGGCCcGCGguccCCGu -3' miRNA: 3'- -UGCgGUCCGaCGGGGG---CCGG-CGU----GGC- -5' |
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31027 | 5' | -67.4 | NC_006560.1 | + | 35329 | 0.66 | 0.403984 |
Target: 5'- -gGCCcucccggAGGCcgccGCCCCCGGCC-C-CCGa -3' miRNA: 3'- ugCGG-------UCCGa---CGGGGGCCGGcGuGGC- -5' |
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31027 | 5' | -67.4 | NC_006560.1 | + | 149871 | 0.66 | 0.399995 |
Target: 5'- cACcCCcGGCa-CCCCCGGCCGCggaagggccccgcgcGCCGa -3' miRNA: 3'- -UGcGGuCCGacGGGGGCCGGCG---------------UGGC- -5' |
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31027 | 5' | -67.4 | NC_006560.1 | + | 107074 | 0.66 | 0.399995 |
Target: 5'- aACGCCA-GCUacguggugacccacgGCCCCCuGGCCcGCGgCGu -3' miRNA: 3'- -UGCGGUcCGA---------------CGGGGG-CCGG-CGUgGC- -5' |
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31027 | 5' | -67.4 | NC_006560.1 | + | 110279 | 0.66 | 0.397614 |
Target: 5'- gGCGCUgucccucugguacggGGGCgcgGCCCUcgucgcccuguuggCGGCCGCGCa- -3' miRNA: 3'- -UGCGG---------------UCCGa--CGGGG--------------GCCGGCGUGgc -5' |
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31027 | 5' | -67.4 | NC_006560.1 | + | 28724 | 0.66 | 0.396822 |
Target: 5'- gAUGCC-GGC-GCCgCCGGUugguCGCGCCa -3' miRNA: 3'- -UGCGGuCCGaCGGgGGCCG----GCGUGGc -5' |
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31027 | 5' | -67.4 | NC_006560.1 | + | 23299 | 0.66 | 0.396822 |
Target: 5'- cGCGCCccugcuGGCgcgcgagaacGCCgCCgCGGCCGgCGCCGc -3' miRNA: 3'- -UGCGGu-----CCGa---------CGG-GG-GCCGGC-GUGGC- -5' |
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31027 | 5' | -67.4 | NC_006560.1 | + | 73859 | 0.66 | 0.404785 |
Target: 5'- aGCGCCaAGGC-GCUgCUGGCCGgggaCGCCc -3' miRNA: 3'- -UGCGG-UCCGaCGGgGGCCGGC----GUGGc -5' |
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31027 | 5' | -67.4 | NC_006560.1 | + | 140284 | 0.66 | 0.404785 |
Target: 5'- -gGCC-GGCggggguaucGUCCagucccagcgCCGGCCGCGCCGg -3' miRNA: 3'- ugCGGuCCGa--------CGGG----------GGCCGGCGUGGC- -5' |
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31027 | 5' | -67.4 | NC_006560.1 | + | 145232 | 0.66 | 0.404785 |
Target: 5'- gGCGCCccggGGGagcccgcaGCCCCCGGCCccgugggggaGCcCCGg -3' miRNA: 3'- -UGCGG----UCCga------CGGGGGCCGG----------CGuGGC- -5' |
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31027 | 5' | -67.4 | NC_006560.1 | + | 52227 | 0.66 | 0.412848 |
Target: 5'- -gGCUGGcgaGCUGCcuggCCCCGGCCggcgcggcGCACCGc -3' miRNA: 3'- ugCGGUC---CGACG----GGGGCCGG--------CGUGGC- -5' |
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31027 | 5' | -67.4 | NC_006560.1 | + | 123575 | 0.66 | 0.412848 |
Target: 5'- uCGacaaCAGGCUGUcgcccgacuucgCCCUGGCCGUccuggcguACCGg -3' miRNA: 3'- uGCg---GUCCGACG------------GGGGCCGGCG--------UGGC- -5' |
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31027 | 5' | -67.4 | NC_006560.1 | + | 124785 | 0.66 | 0.410419 |
Target: 5'- -gGCCGGGCggcGCUucguguucugcgagCCCGGCgaCGCGCCc -3' miRNA: 3'- ugCGGUCCGa--CGG--------------GGGCCG--GCGUGGc -5' |
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31027 | 5' | -67.4 | NC_006560.1 | + | 144765 | 0.66 | 0.407998 |
Target: 5'- cCGCCGGcggcgacggcccccuGCcccucgGCCCCCGGCgGCuACCc -3' miRNA: 3'- uGCGGUC---------------CGa-----CGGGGGCCGgCG-UGGc -5' |
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31027 | 5' | -67.4 | NC_006560.1 | + | 31164 | 0.66 | 0.407998 |
Target: 5'- -gGCCucGCUGCCCgcgccccccgacgcgCCGGCcCGC-CCGg -3' miRNA: 3'- ugCGGucCGACGGG---------------GGCCG-GCGuGGC- -5' |
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31027 | 5' | -67.4 | NC_006560.1 | + | 111351 | 0.66 | 0.404785 |
Target: 5'- gGCGCCuGGCcacgcgcgUGgCCCgGGCCaCGCUGg -3' miRNA: 3'- -UGCGGuCCG--------ACgGGGgCCGGcGUGGC- -5' |
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31027 | 5' | -67.4 | NC_006560.1 | + | 89300 | 0.66 | 0.404785 |
Target: 5'- aAUGCC-GGCcGUUCCCGGCgGgACCu -3' miRNA: 3'- -UGCGGuCCGaCGGGGGCCGgCgUGGc -5' |
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31027 | 5' | -67.4 | NC_006560.1 | + | 48578 | 0.66 | 0.404785 |
Target: 5'- cGCGCCAGcacgcggcaGCUGCaCCgCCaGGCgGCGCUc -3' miRNA: 3'- -UGCGGUC---------CGACG-GG-GG-CCGgCGUGGc -5' |
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31027 | 5' | -67.4 | NC_006560.1 | + | 44064 | 0.66 | 0.404785 |
Target: 5'- aGCGCCAGGCU-CCgCUCGuagCGCGCCu -3' miRNA: 3'- -UGCGGUCCGAcGG-GGGCcg-GCGUGGc -5' |
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31027 | 5' | -67.4 | NC_006560.1 | + | 26929 | 0.66 | 0.404785 |
Target: 5'- cCGCCGGGgaGgCCgCggGGCCGCggagGCCGg -3' miRNA: 3'- uGCGGUCCgaCgGGgG--CCGGCG----UGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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