miRNA display CGI


Results 101 - 120 of 417 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31027 5' -67.4 NC_006560.1 + 133322 0.66 0.396822
Target:  5'- aGCGCCugguGGCUGauggCCUCGGC-GaCGCCGa -3'
miRNA:   3'- -UGCGGu---CCGACg---GGGGCCGgC-GUGGC- -5'
31027 5' -67.4 NC_006560.1 + 65922 0.66 0.396822
Target:  5'- -gGCCguGGGCcGCCCCCgcagguccGGCCGcCAgCGg -3'
miRNA:   3'- ugCGG--UCCGaCGGGGG--------CCGGC-GUgGC- -5'
31027 5' -67.4 NC_006560.1 + 139314 0.66 0.396031
Target:  5'- gGCGCCucgggcgcgggagAGGCggGCgCCUCGGCgGC-CCGc -3'
miRNA:   3'- -UGCGG-------------UCCGa-CG-GGGGCCGgCGuGGC- -5'
31027 5' -67.4 NC_006560.1 + 16841 0.66 0.392093
Target:  5'- gGCGCUccagauguccaccgaGGGCguguacggGUCCCCGGCCaGgACCu -3'
miRNA:   3'- -UGCGG---------------UCCGa-------CGGGGGCCGG-CgUGGc -5'
31027 5' -67.4 NC_006560.1 + 2495 0.66 0.392093
Target:  5'- cGCGCgCAGGCgGCCUCgacgcgcgcgaagaGGCCGgGCCc -3'
miRNA:   3'- -UGCG-GUCCGaCGGGGg-------------CCGGCgUGGc -5'
31027 5' -67.4 NC_006560.1 + 107074 0.66 0.399995
Target:  5'- aACGCCA-GCUacguggugacccacgGCCCCCuGGCCcGCGgCGu -3'
miRNA:   3'- -UGCGGUcCGA---------------CGGGGG-CCGG-CGUgGC- -5'
31027 5' -67.4 NC_006560.1 + 149871 0.66 0.399995
Target:  5'- cACcCCcGGCa-CCCCCGGCCGCggaagggccccgcgcGCCGa -3'
miRNA:   3'- -UGcGGuCCGacGGGGGCCGGCG---------------UGGC- -5'
31027 5' -67.4 NC_006560.1 + 111351 0.66 0.404785
Target:  5'- gGCGCCuGGCcacgcgcgUGgCCCgGGCCaCGCUGg -3'
miRNA:   3'- -UGCGGuCCG--------ACgGGGgCCGGcGUGGC- -5'
31027 5' -67.4 NC_006560.1 + 89300 0.66 0.404785
Target:  5'- aAUGCC-GGCcGUUCCCGGCgGgACCu -3'
miRNA:   3'- -UGCGGuCCGaCGGGGGCCGgCgUGGc -5'
31027 5' -67.4 NC_006560.1 + 48578 0.66 0.404785
Target:  5'- cGCGCCAGcacgcggcaGCUGCaCCgCCaGGCgGCGCUc -3'
miRNA:   3'- -UGCGGUC---------CGACG-GG-GG-CCGgCGUGGc -5'
31027 5' -67.4 NC_006560.1 + 44064 0.66 0.404785
Target:  5'- aGCGCCAGGCU-CCgCUCGuagCGCGCCu -3'
miRNA:   3'- -UGCGGUCCGAcGG-GGGCcg-GCGUGGc -5'
31027 5' -67.4 NC_006560.1 + 26929 0.66 0.404785
Target:  5'- cCGCCGGGgaGgCCgCggGGCCGCggagGCCGg -3'
miRNA:   3'- uGCGGUCCgaCgGGgG--CCGGCG----UGGC- -5'
31027 5' -67.4 NC_006560.1 + 145232 0.66 0.404785
Target:  5'- gGCGCCccggGGGagcccgcaGCCCCCGGCCccgugggggaGCcCCGg -3'
miRNA:   3'- -UGCGG----UCCga------CGGGGGCCGG----------CGuGGC- -5'
31027 5' -67.4 NC_006560.1 + 140284 0.66 0.404785
Target:  5'- -gGCC-GGCggggguaucGUCCagucccagcgCCGGCCGCGCCGg -3'
miRNA:   3'- ugCGGuCCGa--------CGGG----------GGCCGGCGUGGC- -5'
31027 5' -67.4 NC_006560.1 + 73859 0.66 0.404785
Target:  5'- aGCGCCaAGGC-GCUgCUGGCCGgggaCGCCc -3'
miRNA:   3'- -UGCGG-UCCGaCGGgGGCCGGC----GUGGc -5'
31027 5' -67.4 NC_006560.1 + 56892 0.66 0.404785
Target:  5'- cGCGCCGGGCccCCCCUcGCgGaGCCGg -3'
miRNA:   3'- -UGCGGUCCGacGGGGGcCGgCgUGGC- -5'
31027 5' -67.4 NC_006560.1 + 39015 0.66 0.404785
Target:  5'- -gGCCcagGGGCUGUCCggGGCCGCgaacugcgucccGCCGa -3'
miRNA:   3'- ugCGG---UCCGACGGGggCCGGCG------------UGGC- -5'
31027 5' -67.4 NC_006560.1 + 10784 0.66 0.404785
Target:  5'- cCGCCAGGa-GCCCCC-GCgGgGCCc -3'
miRNA:   3'- uGCGGUCCgaCGGGGGcCGgCgUGGc -5'
31027 5' -67.4 NC_006560.1 + 134458 0.66 0.404785
Target:  5'- gGCG-CGGGCgGCCCCCgcgGGCCcGCGguccCCGu -3'
miRNA:   3'- -UGCgGUCCGaCGGGGG---CCGG-CGU----GGC- -5'
31027 5' -67.4 NC_006560.1 + 35329 0.66 0.403984
Target:  5'- -gGCCcucccggAGGCcgccGCCCCCGGCC-C-CCGa -3'
miRNA:   3'- ugCGG-------UCCGa---CGGGGGCCGGcGuGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.