miRNA display CGI


Results 21 - 40 of 417 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31027 5' -67.4 NC_006560.1 + 53294 0.66 0.412848
Target:  5'- aGCGCCAGGagcGCUUCU-GUCGCGCCa -3'
miRNA:   3'- -UGCGGUCCga-CGGGGGcCGGCGUGGc -5'
31027 5' -67.4 NC_006560.1 + 63841 0.66 0.412848
Target:  5'- aGCGCCGGGCcuccucGCCCgCCaGCaCGC-CCu -3'
miRNA:   3'- -UGCGGUCCGa-----CGGG-GGcCG-GCGuGGc -5'
31027 5' -67.4 NC_006560.1 + 95097 0.66 0.412848
Target:  5'- -gGCCGGGCcGCCgCCGacguccGCgaGCGCCGg -3'
miRNA:   3'- ugCGGUCCGaCGGgGGC------CGg-CGUGGC- -5'
31027 5' -67.4 NC_006560.1 + 107885 0.66 0.412848
Target:  5'- cCGUCAGGCggGCgaCCCggguGGCCGCGgCCa -3'
miRNA:   3'- uGCGGUCCGa-CGg-GGG----CCGGCGU-GGc -5'
31027 5' -67.4 NC_006560.1 + 148407 0.66 0.412848
Target:  5'- gACGCgGGGC-GCUCCgGGC-GgGCCGg -3'
miRNA:   3'- -UGCGgUCCGaCGGGGgCCGgCgUGGC- -5'
31027 5' -67.4 NC_006560.1 + 85857 0.66 0.412848
Target:  5'- cGCGCCcgaAGGCgucgaGCCCcgCCGGCaggggguGCGCCa -3'
miRNA:   3'- -UGCGG---UCCGa----CGGG--GGCCGg------CGUGGc -5'
31027 5' -67.4 NC_006560.1 + 96941 0.66 0.412848
Target:  5'- aGCGCgaccucucgaCGGGCcGCCgCgCC-GCCGCGCCGg -3'
miRNA:   3'- -UGCG----------GUCCGaCGG-G-GGcCGGCGUGGC- -5'
31027 5' -67.4 NC_006560.1 + 127472 0.66 0.412848
Target:  5'- cACGCCgcgcgcgagacGGGCUcgccGCCCgCGGgCGCGgCGg -3'
miRNA:   3'- -UGCGG-----------UCCGA----CGGGgGCCgGCGUgGC- -5'
31027 5' -67.4 NC_006560.1 + 124785 0.66 0.410419
Target:  5'- -gGCCGGGCggcGCUucguguucugcgagCCCGGCgaCGCGCCc -3'
miRNA:   3'- ugCGGUCCGa--CGG--------------GGGCCG--GCGUGGc -5'
31027 5' -67.4 NC_006560.1 + 144765 0.66 0.407998
Target:  5'- cCGCCGGcggcgacggcccccuGCcccucgGCCCCCGGCgGCuACCc -3'
miRNA:   3'- uGCGGUC---------------CGa-----CGGGGGCCGgCG-UGGc -5'
31027 5' -67.4 NC_006560.1 + 31164 0.66 0.407998
Target:  5'- -gGCCucGCUGCCCgcgccccccgacgcgCCGGCcCGC-CCGg -3'
miRNA:   3'- ugCGGucCGACGGG---------------GGCCG-GCGuGGC- -5'
31027 5' -67.4 NC_006560.1 + 56892 0.66 0.404785
Target:  5'- cGCGCCGGGCccCCCCUcGCgGaGCCGg -3'
miRNA:   3'- -UGCGGUCCGacGGGGGcCGgCgUGGC- -5'
31027 5' -67.4 NC_006560.1 + 73859 0.66 0.404785
Target:  5'- aGCGCCaAGGC-GCUgCUGGCCGgggaCGCCc -3'
miRNA:   3'- -UGCGG-UCCGaCGGgGGCCGGC----GUGGc -5'
31027 5' -67.4 NC_006560.1 + 140284 0.66 0.404785
Target:  5'- -gGCC-GGCggggguaucGUCCagucccagcgCCGGCCGCGCCGg -3'
miRNA:   3'- ugCGGuCCGa--------CGGG----------GGCCGGCGUGGC- -5'
31027 5' -67.4 NC_006560.1 + 145232 0.66 0.404785
Target:  5'- gGCGCCccggGGGagcccgcaGCCCCCGGCCccgugggggaGCcCCGg -3'
miRNA:   3'- -UGCGG----UCCga------CGGGGGCCGG----------CGuGGC- -5'
31027 5' -67.4 NC_006560.1 + 26929 0.66 0.404785
Target:  5'- cCGCCGGGgaGgCCgCggGGCCGCggagGCCGg -3'
miRNA:   3'- uGCGGUCCgaCgGGgG--CCGGCG----UGGC- -5'
31027 5' -67.4 NC_006560.1 + 44064 0.66 0.404785
Target:  5'- aGCGCCAGGCU-CCgCUCGuagCGCGCCu -3'
miRNA:   3'- -UGCGGUCCGAcGG-GGGCcg-GCGUGGc -5'
31027 5' -67.4 NC_006560.1 + 48578 0.66 0.404785
Target:  5'- cGCGCCAGcacgcggcaGCUGCaCCgCCaGGCgGCGCUc -3'
miRNA:   3'- -UGCGGUC---------CGACG-GG-GG-CCGgCGUGGc -5'
31027 5' -67.4 NC_006560.1 + 89300 0.66 0.404785
Target:  5'- aAUGCC-GGCcGUUCCCGGCgGgACCu -3'
miRNA:   3'- -UGCGGuCCGaCGGGGGCCGgCgUGGc -5'
31027 5' -67.4 NC_006560.1 + 39015 0.66 0.404785
Target:  5'- -gGCCcagGGGCUGUCCggGGCCGCgaacugcgucccGCCGa -3'
miRNA:   3'- ugCGG---UCCGACGGGggCCGGCG------------UGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.