miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31028 3' -54.8 NC_006560.1 + 7722 0.7 0.780988
Target:  5'- gAGCAgCCGUCUgcgC-ACCUGCAGACCc- -3'
miRNA:   3'- -UUGU-GGUAGGa--GaUGGACGUCUGGcc -5'
31028 3' -54.8 NC_006560.1 + 15326 0.66 0.925448
Target:  5'- cGCGCCgGUCCcguUCgcgGCCgGCGcGGCCGGg -3'
miRNA:   3'- uUGUGG-UAGG---AGa--UGGaCGU-CUGGCC- -5'
31028 3' -54.8 NC_006560.1 + 18254 0.66 0.925448
Target:  5'- gGACGCCAgcccgcUCCUguggaacuucCUGCUgcgGCAGuGCCGGa -3'
miRNA:   3'- -UUGUGGU------AGGA----------GAUGGa--CGUC-UGGCC- -5'
31028 3' -54.8 NC_006560.1 + 34977 0.67 0.905456
Target:  5'- -cCGCCGggccccccgggcgCCUCgggGCC-GCGGGCCGGc -3'
miRNA:   3'- uuGUGGUa------------GGAGa--UGGaCGUCUGGCC- -5'
31028 3' -54.8 NC_006560.1 + 44225 0.69 0.790305
Target:  5'- cAGCGCCGUcaCCUCcACCUGCGGcCCc- -3'
miRNA:   3'- -UUGUGGUA--GGAGaUGGACGUCuGGcc -5'
31028 3' -54.8 NC_006560.1 + 52287 0.66 0.930788
Target:  5'- cGACGCgCAUCUuuggcggCUGCCUGCuccccacGCCGGa -3'
miRNA:   3'- -UUGUG-GUAGGa------GAUGGACGuc-----UGGCC- -5'
31028 3' -54.8 NC_006560.1 + 52565 0.69 0.826017
Target:  5'- cGCGCCAUCCUggcgcaguaCUggaagcACCUGCAGGCgGu -3'
miRNA:   3'- uUGUGGUAGGA---------GA------UGGACGUCUGgCc -5'
31028 3' -54.8 NC_006560.1 + 70442 0.66 0.925448
Target:  5'- --gGCCGcCCUggcggGCCUGCGGGCCGc -3'
miRNA:   3'- uugUGGUaGGAga---UGGACGUCUGGCc -5'
31028 3' -54.8 NC_006560.1 + 73766 0.68 0.866527
Target:  5'- --gGCCGUCCgCUcCCgGCuGGACCGGg -3'
miRNA:   3'- uugUGGUAGGaGAuGGaCG-UCUGGCC- -5'
31028 3' -54.8 NC_006560.1 + 74693 0.66 0.925448
Target:  5'- cGCGCCGaCCUCUGggggcuCCUGggcCAGuACCGGg -3'
miRNA:   3'- uUGUGGUaGGAGAU------GGAC---GUC-UGGCC- -5'
31028 3' -54.8 NC_006560.1 + 77195 0.67 0.895079
Target:  5'- gAGCGCCGcgcgCCgg-ACCUGCGGauggugcgcuGCCGGg -3'
miRNA:   3'- -UUGUGGUa---GGagaUGGACGUC----------UGGCC- -5'
31028 3' -54.8 NC_006560.1 + 77749 0.66 0.940731
Target:  5'- cAGCAUCAacgaCCUCauggugGCgCUGguGGCCGGg -3'
miRNA:   3'- -UUGUGGUa---GGAGa-----UG-GACguCUGGCC- -5'
31028 3' -54.8 NC_006560.1 + 81418 0.67 0.888285
Target:  5'- cGCGCCA-CC---ACCcGCGGGCCGGg -3'
miRNA:   3'- uUGUGGUaGGagaUGGaCGUCUGGCC- -5'
31028 3' -54.8 NC_006560.1 + 84827 0.68 0.842819
Target:  5'- cACACCc-CCUCcaggACCUGCuGGCCGa -3'
miRNA:   3'- uUGUGGuaGGAGa---UGGACGuCUGGCc -5'
31028 3' -54.8 NC_006560.1 + 87976 0.74 0.547724
Target:  5'- cGACGCCGcCCUCgUACUUGCGGAucUCGGg -3'
miRNA:   3'- -UUGUGGUaGGAG-AUGGACGUCU--GGCC- -5'
31028 3' -54.8 NC_006560.1 + 89764 0.66 0.930788
Target:  5'- cGugGCCGUCgUCgucggguCCcGCAcGACCGGg -3'
miRNA:   3'- -UugUGGUAGgAGau-----GGaCGU-CUGGCC- -5'
31028 3' -54.8 NC_006560.1 + 90135 0.73 0.598971
Target:  5'- gGACGCCGUCCggcggaucccgcUCUACCcccUGCAGauguucauGCCGGa -3'
miRNA:   3'- -UUGUGGUAGG------------AGAUGG---ACGUC--------UGGCC- -5'
31028 3' -54.8 NC_006560.1 + 92630 0.76 0.441047
Target:  5'- cGCACCcgcaaguucGUCCUCgccUGCCcGCGGGCCGGg -3'
miRNA:   3'- uUGUGG---------UAGGAG---AUGGaCGUCUGGCC- -5'
31028 3' -54.8 NC_006560.1 + 95905 0.69 0.81734
Target:  5'- cGACGucuucuCCAUCCUCUAcucgguCCUGCAGcACCuGGc -3'
miRNA:   3'- -UUGU------GGUAGGAGAU------GGACGUC-UGG-CC- -5'
31028 3' -54.8 NC_006560.1 + 95948 0.67 0.888285
Target:  5'- ---cCCAagCUCgcgGCCgGCGGGCCGGa -3'
miRNA:   3'- uuguGGUagGAGa--UGGaCGUCUGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.