miRNA display CGI


Results 41 - 60 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31028 5' -64.9 NC_006560.1 + 32797 0.66 0.522618
Target:  5'- gGGgGGGCCGGg-GGCGC-GGCcGGgGa -3'
miRNA:   3'- -CCgCCCGGCUgaCCGUGgCCGaCCgC- -5'
31028 5' -64.9 NC_006560.1 + 113003 0.66 0.522618
Target:  5'- gGGCGGGCaCGACcccgucuacgUGGCGgCCugcaaccugGGCacGGCGg -3'
miRNA:   3'- -CCGCCCG-GCUG----------ACCGU-GG---------CCGa-CCGC- -5'
31028 5' -64.9 NC_006560.1 + 150125 0.66 0.522618
Target:  5'- cGCGcGCCGGC-GGCcucagcuuCCGGCgGGCGc -3'
miRNA:   3'- cCGCcCGGCUGaCCGu-------GGCCGaCCGC- -5'
31028 5' -64.9 NC_006560.1 + 58243 0.66 0.522618
Target:  5'- gGGCcggGGGCCGcCgaGGCgagccGCCGGCcucGGCGu -3'
miRNA:   3'- -CCG---CCCGGCuGa-CCG-----UGGCCGa--CCGC- -5'
31028 5' -64.9 NC_006560.1 + 99225 0.66 0.522618
Target:  5'- cGGCGGGCUG-C-GGC-CCGGaaacgaggggGGCGu -3'
miRNA:   3'- -CCGCCCGGCuGaCCGuGGCCga--------CCGC- -5'
31028 5' -64.9 NC_006560.1 + 114184 0.66 0.526316
Target:  5'- cGCGGGCaacCGGCUGGgcccggcccagccccUGCCGGUcuuUGGCu -3'
miRNA:   3'- cCGCCCG---GCUGACC---------------GUGGCCG---ACCGc -5'
31028 5' -64.9 NC_006560.1 + 55277 0.66 0.529096
Target:  5'- cGGCGacGCCGGCccacucgagcgcggUGGuCACCuGCUGGCc -3'
miRNA:   3'- -CCGCc-CGGCUG--------------ACC-GUGGcCGACCGc -5'
31028 5' -64.9 NC_006560.1 + 120524 0.66 0.529096
Target:  5'- aGCGGggcGCCGAgaGGauccggcccgaaucCGCCGGgUGGCGc -3'
miRNA:   3'- cCGCC---CGGCUgaCC--------------GUGGCCgACCGC- -5'
31028 5' -64.9 NC_006560.1 + 25465 0.67 0.486232
Target:  5'- cGGCGGccGCCGAggaCUGGUAgCCGGCgccGCc -3'
miRNA:   3'- -CCGCC--CGGCU---GACCGU-GGCCGac-CGc -5'
31028 5' -64.9 NC_006560.1 + 2639 0.67 0.486232
Target:  5'- uGGCGGcGCgCGACgacgGGCccgUCGGCgGGCc -3'
miRNA:   3'- -CCGCC-CG-GCUGa---CCGu--GGCCGaCCGc -5'
31028 5' -64.9 NC_006560.1 + 149490 0.67 0.484444
Target:  5'- cGGCccGGGCCGACgcuccccgcccgGGcCGCCGGCccgGGa- -3'
miRNA:   3'- -CCG--CCCGGCUGa-----------CC-GUGGCCGa--CCgc -5'
31028 5' -64.9 NC_006560.1 + 147659 0.67 0.477323
Target:  5'- cGGCGGuGCCGGC-GcGCACCgccuccucGGCcucGGCGc -3'
miRNA:   3'- -CCGCC-CGGCUGaC-CGUGG--------CCGa--CCGC- -5'
31028 5' -64.9 NC_006560.1 + 127152 0.67 0.477323
Target:  5'- uGCGGGUCGcggcgucgaGCUcGGCggcguccuGCCGGC-GGCGg -3'
miRNA:   3'- cCGCCCGGC---------UGA-CCG--------UGGCCGaCCGC- -5'
31028 5' -64.9 NC_006560.1 + 81174 0.67 0.486232
Target:  5'- uGCGGGaCCgcggcgGACaUGGCGCgGGUgggGGCGc -3'
miRNA:   3'- cCGCCC-GG------CUG-ACCGUGgCCGa--CCGC- -5'
31028 5' -64.9 NC_006560.1 + 23424 0.67 0.486232
Target:  5'- uGGCGGccgcccucgccGCCGACcgcGGCGCCGcccccGC-GGCGg -3'
miRNA:   3'- -CCGCC-----------CGGCUGa--CCGUGGC-----CGaCCGC- -5'
31028 5' -64.9 NC_006560.1 + 41035 0.67 0.486232
Target:  5'- -aCGGGCCGcaccGCguagauGCAUCGGCgGGCGg -3'
miRNA:   3'- ccGCCCGGC----UGac----CGUGGCCGaCCGC- -5'
31028 5' -64.9 NC_006560.1 + 54137 0.67 0.486232
Target:  5'- aGCGGGCgcccuCGACcc-CACCGGCgaGGCGa -3'
miRNA:   3'- cCGCCCG-----GCUGaccGUGGCCGa-CCGC- -5'
31028 5' -64.9 NC_006560.1 + 133136 0.67 0.486232
Target:  5'- cGGUGGGCgGcCUGGC-CgCGGCaGcGCGc -3'
miRNA:   3'- -CCGCCCGgCuGACCGuG-GCCGaC-CGC- -5'
31028 5' -64.9 NC_006560.1 + 59529 0.67 0.487128
Target:  5'- aGGCGGGCgGGCUcgGGUcgguuaaauacgccuCCGGCccGGCa -3'
miRNA:   3'- -CCGCCCGgCUGA--CCGu--------------GGCCGa-CCGc -5'
31028 5' -64.9 NC_006560.1 + 85749 0.67 0.477323
Target:  5'- aGGCGcuuGuuGGCguaGGCGCgCGGgUGGCGg -3'
miRNA:   3'- -CCGCc--CggCUGa--CCGUG-GCCgACCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.