miRNA display CGI


Results 61 - 80 of 269 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31028 5' -64.9 NC_006560.1 + 26479 0.71 0.25623
Target:  5'- aGC-GGCCGGC-GGCcCCGGCggggGGCGg -3'
miRNA:   3'- cCGcCCGGCUGaCCGuGGCCGa---CCGC- -5'
31028 5' -64.9 NC_006560.1 + 16377 0.71 0.262041
Target:  5'- gGGgGGGCaUGGC-GGCGCgGGCgGGCGu -3'
miRNA:   3'- -CCgCCCG-GCUGaCCGUGgCCGaCCGC- -5'
31028 5' -64.9 NC_006560.1 + 9861 0.71 0.26796
Target:  5'- uGGCGGcGuCCGuggGGCACCGGgggGGCGg -3'
miRNA:   3'- -CCGCC-C-GGCugaCCGUGGCCga-CCGC- -5'
31028 5' -64.9 NC_006560.1 + 3590 0.71 0.280121
Target:  5'- uGCGGGCCagcagcggcgcGGC-GGCGCCGGCgacgaGGCc -3'
miRNA:   3'- cCGCCCGG-----------CUGaCCGUGGCCGa----CCGc -5'
31028 5' -64.9 NC_006560.1 + 27632 0.71 0.286364
Target:  5'- cGGCGGGCgCGGCcgGGCGCgGGgCgcGGCc -3'
miRNA:   3'- -CCGCCCG-GCUGa-CCGUGgCC-Ga-CCGc -5'
31028 5' -64.9 NC_006560.1 + 4713 0.71 0.273986
Target:  5'- cGGCGGcGCUcGCUGcGC-CCGGC-GGCGa -3'
miRNA:   3'- -CCGCC-CGGcUGAC-CGuGGCCGaCCGC- -5'
31028 5' -64.9 NC_006560.1 + 148757 0.71 0.26796
Target:  5'- gGGCGGccCCGACgGGCGCCauguuggagggGGCgGGCGg -3'
miRNA:   3'- -CCGCCc-GGCUGaCCGUGG-----------CCGaCCGC- -5'
31028 5' -64.9 NC_006560.1 + 78049 0.71 0.262041
Target:  5'- cGCGcGGCCccggaGCUGGCgGCCGGC-GGCGc -3'
miRNA:   3'- cCGC-CCGGc----UGACCG-UGGCCGaCCGC- -5'
31028 5' -64.9 NC_006560.1 + 137220 0.71 0.279502
Target:  5'- aGCGGGCguuCGACUucaagacgcugggGGCGCgGGCggcgGGCGa -3'
miRNA:   3'- cCGCCCG---GCUGA-------------CCGUGgCCGa---CCGC- -5'
31028 5' -64.9 NC_006560.1 + 59012 0.71 0.286364
Target:  5'- cGGacCGGGCCGgcgcGCUGGcCGCCGcGCagGGCGc -3'
miRNA:   3'- -CC--GCCCGGC----UGACC-GUGGC-CGa-CCGC- -5'
31028 5' -64.9 NC_006560.1 + 36101 0.71 0.286364
Target:  5'- cGGCgGGGCCGcgGCgGGCACCGG--GGCc -3'
miRNA:   3'- -CCG-CCCGGC--UGaCCGUGGCCgaCCGc -5'
31028 5' -64.9 NC_006560.1 + 46092 0.71 0.272167
Target:  5'- aGGCGGcGCCGcccGCgggGGCaaaagccaccucccGCCGGUUGGCc -3'
miRNA:   3'- -CCGCC-CGGC---UGa--CCG--------------UGGCCGACCGc -5'
31028 5' -64.9 NC_006560.1 + 131426 0.71 0.280121
Target:  5'- gGGCccGGGCCGuCgcGGCGCUGGCccUGGCc -3'
miRNA:   3'- -CCG--CCCGGCuGa-CCGUGGCCG--ACCGc -5'
31028 5' -64.9 NC_006560.1 + 131387 0.71 0.26796
Target:  5'- cGCGGuGCUGGCgGGCGCUGGCc-GCGg -3'
miRNA:   3'- cCGCC-CGGCUGaCCGUGGCCGacCGC- -5'
31028 5' -64.9 NC_006560.1 + 149327 0.71 0.286364
Target:  5'- cGGCGGGCCGGagacGGCGgCGGCUccuccccgccgcGGgGa -3'
miRNA:   3'- -CCGCCCGGCUga--CCGUgGCCGA------------CCgC- -5'
31028 5' -64.9 NC_006560.1 + 2043 0.7 0.31243
Target:  5'- cGGCGcGGCCGGC-GGCccagcgcacGCgCGGCgcGGCGg -3'
miRNA:   3'- -CCGC-CCGGCUGaCCG---------UG-GCCGa-CCGC- -5'
31028 5' -64.9 NC_006560.1 + 5175 0.7 0.31243
Target:  5'- gGGCGGGCCG-C-GGCGaCGGCggccccgacGGCGg -3'
miRNA:   3'- -CCGCCCGGCuGaCCGUgGCCGa--------CCGC- -5'
31028 5' -64.9 NC_006560.1 + 80106 0.7 0.318538
Target:  5'- gGGCGGgugaGCCGACgGGCGCCgcuccaaacccguGGCUcggGGCa -3'
miRNA:   3'- -CCGCC----CGGCUGaCCGUGG-------------CCGA---CCGc -5'
31028 5' -64.9 NC_006560.1 + 5650 0.7 0.31243
Target:  5'- cGGCGcccGGCCGGCUccgccccggGGCGCgggggCGGCcGGCGg -3'
miRNA:   3'- -CCGC---CCGGCUGA---------CCGUG-----GCCGaCCGC- -5'
31028 5' -64.9 NC_006560.1 + 14256 0.7 0.31243
Target:  5'- cGGCGGuggauGUCGcguUGGCGCCGGC-GGCGu -3'
miRNA:   3'- -CCGCC-----CGGCug-ACCGUGGCCGaCCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.