miRNA display CGI


Results 41 - 60 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31028 5' -64.9 NC_006560.1 + 33486 0.72 0.234034
Target:  5'- cGGgGGGCCGccggcagggagGCgGGCGCCGGCccGGgGg -3'
miRNA:   3'- -CCgCCCGGC-----------UGaCCGUGGCCGa-CCgC- -5'
31028 5' -64.9 NC_006560.1 + 131499 0.72 0.238883
Target:  5'- cGGCGucgucgcGGCCGuCgGGCugCGGCUcgaGGCGg -3'
miRNA:   3'- -CCGC-------CCGGCuGaCCGugGCCGA---CCGC- -5'
31028 5' -64.9 NC_006560.1 + 8678 0.72 0.239427
Target:  5'- cGGCGGcGgCGcCUGaGCGCCGucuGCUGGCGc -3'
miRNA:   3'- -CCGCC-CgGCuGAC-CGUGGC---CGACCGC- -5'
31028 5' -64.9 NC_006560.1 + 134192 0.72 0.239427
Target:  5'- uGGCGGaGCUGcuGCUGGCGCgGGCccGCGg -3'
miRNA:   3'- -CCGCC-CGGC--UGACCGUGgCCGacCGC- -5'
31028 5' -64.9 NC_006560.1 + 3887 0.72 0.239427
Target:  5'- cGGCGGcGUCGGC-GGCGUCGGC-GGCGu -3'
miRNA:   3'- -CCGCC-CGGCUGaCCGUGGCCGaCCGC- -5'
31028 5' -64.9 NC_006560.1 + 108495 0.72 0.239427
Target:  5'- gGGCGuGGCCGcCggggggagGGCgGCCGGC-GGCGg -3'
miRNA:   3'- -CCGC-CCGGCuGa-------CCG-UGGCCGaCCGC- -5'
31028 5' -64.9 NC_006560.1 + 77710 0.72 0.244923
Target:  5'- cGCGGaGCCGGCgGGCGCCcGGCgcccGCGc -3'
miRNA:   3'- cCGCC-CGGCUGaCCGUGG-CCGac--CGC- -5'
31028 5' -64.9 NC_006560.1 + 88677 0.72 0.244923
Target:  5'- uGCGGcGCgGGCUGcGCGCCgcGGCcGGCGg -3'
miRNA:   3'- cCGCC-CGgCUGAC-CGUGG--CCGaCCGC- -5'
31028 5' -64.9 NC_006560.1 + 3470 0.72 0.244923
Target:  5'- uGCGGGCCGcGCgggcGGCGUCGGCgucGGCGu -3'
miRNA:   3'- cCGCCCGGC-UGa---CCGUGGCCGa--CCGC- -5'
31028 5' -64.9 NC_006560.1 + 4040 0.72 0.244923
Target:  5'- -cCGGGgCGGCggcgcGGCGCCGGCcgcGGCGg -3'
miRNA:   3'- ccGCCCgGCUGa----CCGUGGCCGa--CCGC- -5'
31028 5' -64.9 NC_006560.1 + 99612 0.71 0.25623
Target:  5'- cGGCGGGgggCGGCUGGCGgucCgCGGCgaUGGCGc -3'
miRNA:   3'- -CCGCCCg--GCUGACCGU---G-GCCG--ACCGC- -5'
31028 5' -64.9 NC_006560.1 + 118319 0.71 0.25623
Target:  5'- aGGC-GGCCGcCgUGGCGgCGGCcGGCGg -3'
miRNA:   3'- -CCGcCCGGCuG-ACCGUgGCCGaCCGC- -5'
31028 5' -64.9 NC_006560.1 + 26479 0.71 0.25623
Target:  5'- aGC-GGCCGGC-GGCcCCGGCggggGGCGg -3'
miRNA:   3'- cCGcCCGGCUGaCCGuGGCCGa---CCGC- -5'
31028 5' -64.9 NC_006560.1 + 79813 0.71 0.262041
Target:  5'- uGGgGGGCgCGG-UGGCGCCGGgC-GGCGa -3'
miRNA:   3'- -CCgCCCG-GCUgACCGUGGCC-GaCCGC- -5'
31028 5' -64.9 NC_006560.1 + 78049 0.71 0.262041
Target:  5'- cGCGcGGCCccggaGCUGGCgGCCGGC-GGCGc -3'
miRNA:   3'- cCGC-CCGGc----UGACCG-UGGCCGaCCGC- -5'
31028 5' -64.9 NC_006560.1 + 16377 0.71 0.262041
Target:  5'- gGGgGGGCaUGGC-GGCGCgGGCgGGCGu -3'
miRNA:   3'- -CCgCCCG-GCUGaCCGUGgCCGaCCGC- -5'
31028 5' -64.9 NC_006560.1 + 9861 0.71 0.26796
Target:  5'- uGGCGGcGuCCGuggGGCACCGGgggGGCGg -3'
miRNA:   3'- -CCGCC-C-GGCugaCCGUGGCCga-CCGC- -5'
31028 5' -64.9 NC_006560.1 + 131387 0.71 0.26796
Target:  5'- cGCGGuGCUGGCgGGCGCUGGCc-GCGg -3'
miRNA:   3'- cCGCC-CGGCUGaCCGUGGCCGacCGC- -5'
31028 5' -64.9 NC_006560.1 + 148757 0.71 0.26796
Target:  5'- gGGCGGccCCGACgGGCGCCauguuggagggGGCgGGCGg -3'
miRNA:   3'- -CCGCCc-GGCUGaCCGUGG-----------CCGaCCGC- -5'
31028 5' -64.9 NC_006560.1 + 46092 0.71 0.272167
Target:  5'- aGGCGGcGCCGcccGCgggGGCaaaagccaccucccGCCGGUUGGCc -3'
miRNA:   3'- -CCGCC-CGGC---UGa--CCG--------------UGGCCGACCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.