miRNA display CGI


Results 61 - 80 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31028 5' -64.9 NC_006560.1 + 4713 0.71 0.273986
Target:  5'- cGGCGGcGCUcGCUGcGC-CCGGC-GGCGa -3'
miRNA:   3'- -CCGCC-CGGcUGAC-CGuGGCCGaCCGC- -5'
31028 5' -64.9 NC_006560.1 + 89275 0.71 0.273986
Target:  5'- gGGCGGGCCGGCccGGaacccuacaaaUGCCGGCcguucccGGCGg -3'
miRNA:   3'- -CCGCCCGGCUGa-CC-----------GUGGCCGa------CCGC- -5'
31028 5' -64.9 NC_006560.1 + 33631 0.71 0.273986
Target:  5'- gGGgGGGgCGGggGGCGCCGGg-GGCGg -3'
miRNA:   3'- -CCgCCCgGCUgaCCGUGGCCgaCCGC- -5'
31028 5' -64.9 NC_006560.1 + 4833 0.71 0.279502
Target:  5'- gGGuCGGGguccgagUCGAC-GGCGCCGGC-GGCGa -3'
miRNA:   3'- -CC-GCCC-------GGCUGaCCGUGGCCGaCCGC- -5'
31028 5' -64.9 NC_006560.1 + 137220 0.71 0.279502
Target:  5'- aGCGGGCguuCGACUucaagacgcugggGGCGCgGGCggcgGGCGa -3'
miRNA:   3'- cCGCCCG---GCUGA-------------CCGUGgCCGa---CCGC- -5'
31028 5' -64.9 NC_006560.1 + 3590 0.71 0.280121
Target:  5'- uGCGGGCCagcagcggcgcGGC-GGCGCCGGCgacgaGGCc -3'
miRNA:   3'- cCGCCCGG-----------CUGaCCGUGGCCGa----CCGc -5'
31028 5' -64.9 NC_006560.1 + 131426 0.71 0.280121
Target:  5'- gGGCccGGGCCGuCgcGGCGCUGGCccUGGCc -3'
miRNA:   3'- -CCG--CCCGGCuGa-CCGUGGCCG--ACCGc -5'
31028 5' -64.9 NC_006560.1 + 47010 0.71 0.280121
Target:  5'- cGCGGGCCGcgcccGCgGGCGCUcGCaGGCGg -3'
miRNA:   3'- cCGCCCGGC-----UGaCCGUGGcCGaCCGC- -5'
31028 5' -64.9 NC_006560.1 + 137619 0.71 0.286364
Target:  5'- aGGUGcGCCGGC-GGCACgCGGCcgcggggcUGGCGg -3'
miRNA:   3'- -CCGCcCGGCUGaCCGUG-GCCG--------ACCGC- -5'
31028 5' -64.9 NC_006560.1 + 59012 0.71 0.286364
Target:  5'- cGGacCGGGCCGgcgcGCUGGcCGCCGcGCagGGCGc -3'
miRNA:   3'- -CC--GCCCGGC----UGACC-GUGGC-CGa-CCGC- -5'
31028 5' -64.9 NC_006560.1 + 3428 0.71 0.286364
Target:  5'- cGGCGGGC--GCgGGCGCCcGCgggGGCGa -3'
miRNA:   3'- -CCGCCCGgcUGaCCGUGGcCGa--CCGC- -5'
31028 5' -64.9 NC_006560.1 + 149327 0.71 0.286364
Target:  5'- cGGCGGGCCGGagacGGCGgCGGCUccuccccgccgcGGgGa -3'
miRNA:   3'- -CCGCCCGGCUga--CCGUgGCCGA------------CCgC- -5'
31028 5' -64.9 NC_006560.1 + 27632 0.71 0.286364
Target:  5'- cGGCGGGCgCGGCcgGGCGCgGGgCgcGGCc -3'
miRNA:   3'- -CCGCCCG-GCUGa-CCGUGgCC-Ga-CCGc -5'
31028 5' -64.9 NC_006560.1 + 36101 0.71 0.286364
Target:  5'- cGGCgGGGCCGcgGCgGGCACCGG--GGCc -3'
miRNA:   3'- -CCG-CCCGGC--UGaCCGUGGCCgaCCGc -5'
31028 5' -64.9 NC_006560.1 + 18937 0.71 0.286364
Target:  5'- cGGCGuGCCGcGCggGGC-CCGGCgGGCGc -3'
miRNA:   3'- -CCGCcCGGC-UGa-CCGuGGCCGaCCGC- -5'
31028 5' -64.9 NC_006560.1 + 75572 0.7 0.292716
Target:  5'- aGCGcGCCGAgCgGGCGCUGGC-GGCGa -3'
miRNA:   3'- cCGCcCGGCU-GaCCGUGGCCGaCCGC- -5'
31028 5' -64.9 NC_006560.1 + 11928 0.7 0.292716
Target:  5'- cGCGGGCCcGCaggaGGgGCCGGCgGGCc -3'
miRNA:   3'- cCGCCCGGcUGa---CCgUGGCCGaCCGc -5'
31028 5' -64.9 NC_006560.1 + 95575 0.7 0.299177
Target:  5'- uGgGGGCCGGg-GGCGCCGGCaccgagugGGCc -3'
miRNA:   3'- cCgCCCGGCUgaCCGUGGCCGa-------CCGc -5'
31028 5' -64.9 NC_006560.1 + 131661 0.7 0.299177
Target:  5'- gGGCGucGCCGGCgaGGCcCUGGCgGGCGg -3'
miRNA:   3'- -CCGCc-CGGCUGa-CCGuGGCCGaCCGC- -5'
31028 5' -64.9 NC_006560.1 + 11996 0.7 0.299177
Target:  5'- uGCGGGUCGAgcGGCACagGGCgaaGGCGa -3'
miRNA:   3'- cCGCCCGGCUgaCCGUGg-CCGa--CCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.