miRNA display CGI


Results 81 - 100 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31028 5' -64.9 NC_006560.1 + 2580 0.7 0.305749
Target:  5'- cGGCGGGCCagcgGACgucGCACUGcGC-GGCGg -3'
miRNA:   3'- -CCGCCCGG----CUGac-CGUGGC-CGaCCGC- -5'
31028 5' -64.9 NC_006560.1 + 81430 0.7 0.305749
Target:  5'- cGCGGGCCGGggcGGCcCCGGUcgcGGCGu -3'
miRNA:   3'- cCGCCCGGCUga-CCGuGGCCGa--CCGC- -5'
31028 5' -64.9 NC_006560.1 + 125180 0.7 0.308408
Target:  5'- cGCGGGCCGGC-GGCGaaaagaggcggugcCCGGCccucgaccgggcccUGGUGg -3'
miRNA:   3'- cCGCCCGGCUGaCCGU--------------GGCCG--------------ACCGC- -5'
31028 5' -64.9 NC_006560.1 + 123432 0.7 0.311757
Target:  5'- cGCGGGCCGGCcccUGGgccacgaCugCGGcCUGGCc -3'
miRNA:   3'- cCGCCCGGCUG---ACC-------GugGCC-GACCGc -5'
31028 5' -64.9 NC_006560.1 + 136064 0.7 0.31243
Target:  5'- gGGCcuGGCCGAg-GGCagccucACgCGGCUGGCGg -3'
miRNA:   3'- -CCGc-CCGGCUgaCCG------UG-GCCGACCGC- -5'
31028 5' -64.9 NC_006560.1 + 5650 0.7 0.31243
Target:  5'- cGGCGcccGGCCGGCUccgccccggGGCGCgggggCGGCcGGCGg -3'
miRNA:   3'- -CCGC---CCGGCUGA---------CCGUG-----GCCGaCCGC- -5'
31028 5' -64.9 NC_006560.1 + 14256 0.7 0.31243
Target:  5'- cGGCGGuggauGUCGcguUGGCGCCGGC-GGCGu -3'
miRNA:   3'- -CCGCC-----CGGCug-ACCGUGGCCGaCCGC- -5'
31028 5' -64.9 NC_006560.1 + 147279 0.7 0.31243
Target:  5'- cGGCcgGGGCCgGGCggggGGCuCUGGCgGGCGc -3'
miRNA:   3'- -CCG--CCCGG-CUGa---CCGuGGCCGaCCGC- -5'
31028 5' -64.9 NC_006560.1 + 2043 0.7 0.31243
Target:  5'- cGGCGcGGCCGGC-GGCccagcgcacGCgCGGCgcGGCGg -3'
miRNA:   3'- -CCGC-CCGGCUGaCCG---------UG-GCCGa-CCGC- -5'
31028 5' -64.9 NC_006560.1 + 5175 0.7 0.31243
Target:  5'- gGGCGGGCCG-C-GGCGaCGGCggccccgacGGCGg -3'
miRNA:   3'- -CCGCCCGGCuGaCCGUgGCCGa--------CCGC- -5'
31028 5' -64.9 NC_006560.1 + 140473 0.7 0.31243
Target:  5'- cGGCGGGCCGGgggGGCGgaggaGGUgggGGCGg -3'
miRNA:   3'- -CCGCCCGGCUga-CCGUgg---CCGa--CCGC- -5'
31028 5' -64.9 NC_006560.1 + 12319 0.7 0.31243
Target:  5'- aGGCgccccaucgGGGaCCGGa-GGCACCucggGGCUGGCGg -3'
miRNA:   3'- -CCG---------CCC-GGCUgaCCGUGG----CCGACCGC- -5'
31028 5' -64.9 NC_006560.1 + 5353 0.7 0.31243
Target:  5'- cGGCGGGCCGuCguccGGguCCGGCgagcccGCGc -3'
miRNA:   3'- -CCGCCCGGCuGa---CCguGGCCGac----CGC- -5'
31028 5' -64.9 NC_006560.1 + 15877 0.7 0.31243
Target:  5'- cGGCguggGGGCCGGCgaccGGCGCCaGCagcgaGGCGu -3'
miRNA:   3'- -CCG----CCCGGCUGa---CCGUGGcCGa----CCGC- -5'
31028 5' -64.9 NC_006560.1 + 80106 0.7 0.318538
Target:  5'- gGGCGGgugaGCCGACgGGCGCCgcuccaaacccguGGCUcggGGCa -3'
miRNA:   3'- -CCGCC----CGGCUGaCCGUGG-------------CCGA---CCGc -5'
31028 5' -64.9 NC_006560.1 + 3068 0.7 0.319222
Target:  5'- gGGCGcGGCCGGa--GC-CCGGCUcgGGCGg -3'
miRNA:   3'- -CCGC-CCGGCUgacCGuGGCCGA--CCGC- -5'
31028 5' -64.9 NC_006560.1 + 4879 0.7 0.319222
Target:  5'- cGGCGG--CGGC-GGCGCCGGCgggGGCc -3'
miRNA:   3'- -CCGCCcgGCUGaCCGUGGCCGa--CCGc -5'
31028 5' -64.9 NC_006560.1 + 26076 0.7 0.319222
Target:  5'- uGCGGGCgGAacccgGGCGgcCCGGCgcGGCGg -3'
miRNA:   3'- cCGCCCGgCUga---CCGU--GGCCGa-CCGC- -5'
31028 5' -64.9 NC_006560.1 + 36908 0.7 0.319222
Target:  5'- cGGCgccGGGCCGA---GCGCCGGagcguCUGGCGg -3'
miRNA:   3'- -CCG---CCCGGCUgacCGUGGCC-----GACCGC- -5'
31028 5' -64.9 NC_006560.1 + 83837 0.7 0.326124
Target:  5'- uGCGGGCCuacuGGCUGGC-CCuGC-GGCGc -3'
miRNA:   3'- cCGCCCGG----CUGACCGuGGcCGaCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.