miRNA display CGI


Results 61 - 80 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31028 5' -64.9 NC_006560.1 + 25987 0.67 0.477323
Target:  5'- gGGCgaGGGCCG-CggggggaggGGCGCCGuGCgGGCc -3'
miRNA:   3'- -CCG--CCCGGCuGa--------CCGUGGC-CGaCCGc -5'
31028 5' -64.9 NC_006560.1 + 39596 0.67 0.477323
Target:  5'- uGGCGGgcgcGCCGGCccgcgGaGCGCCgcGGCgGGCGu -3'
miRNA:   3'- -CCGCC----CGGCUGa----C-CGUGG--CCGaCCGC- -5'
31028 5' -64.9 NC_006560.1 + 85749 0.67 0.477323
Target:  5'- aGGCGcuuGuuGGCguaGGCGCgCGGgUGGCGg -3'
miRNA:   3'- -CCGCc--CggCUGa--CCGUG-GCCgACCGC- -5'
31028 5' -64.9 NC_006560.1 + 127152 0.67 0.477323
Target:  5'- uGCGGGUCGcggcgucgaGCUcGGCggcguccuGCCGGC-GGCGg -3'
miRNA:   3'- cCGCCCGGC---------UGA-CCG--------UGGCCGaCCGC- -5'
31028 5' -64.9 NC_006560.1 + 147659 0.67 0.477323
Target:  5'- cGGCGGuGCCGGC-GcGCACCgccuccucGGCcucGGCGc -3'
miRNA:   3'- -CCGCC-CGGCUGaC-CGUGG--------CCGa--CCGC- -5'
31028 5' -64.9 NC_006560.1 + 144101 0.67 0.476436
Target:  5'- uGGUGGucuccGCCGGCcccugccUGGCuCCGGCggccgcGGCGg -3'
miRNA:   3'- -CCGCC-----CGGCUG-------ACCGuGGCCGa-----CCGC- -5'
31028 5' -64.9 NC_006560.1 + 71381 0.67 0.472016
Target:  5'- gGGCGGGCCGggggucgcauaaacaGCcgUGGgGCgGGCcgGGCc -3'
miRNA:   3'- -CCGCCCGGC---------------UG--ACCgUGgCCGa-CCGc -5'
31028 5' -64.9 NC_006560.1 + 2294 0.67 0.468494
Target:  5'- cGGCGGaaGUCGGgc-GCGCCGGC-GGCGg -3'
miRNA:   3'- -CCGCC--CGGCUgacCGUGGCCGaCCGC- -5'
31028 5' -64.9 NC_006560.1 + 39461 0.67 0.468494
Target:  5'- uGCGcGGUCGGCgc-CGCCGGCgcGGCGa -3'
miRNA:   3'- cCGC-CCGGCUGaccGUGGCCGa-CCGC- -5'
31028 5' -64.9 NC_006560.1 + 52336 0.67 0.468494
Target:  5'- cGGCGcGGCCGug-GGCGCCcuGC-GGCa -3'
miRNA:   3'- -CCGC-CCGGCugaCCGUGGc-CGaCCGc -5'
31028 5' -64.9 NC_006560.1 + 3350 0.67 0.468494
Target:  5'- cGGCgucGGcGUCGGCgucGGCGUCGGCgGGCGg -3'
miRNA:   3'- -CCG---CC-CGGCUGa--CCGUGGCCGaCCGC- -5'
31028 5' -64.9 NC_006560.1 + 132320 0.67 0.468494
Target:  5'- cGGCGcGGCCGGg-GcGCACgCGGUcgcggGGCGg -3'
miRNA:   3'- -CCGC-CCGGCUgaC-CGUG-GCCGa----CCGC- -5'
31028 5' -64.9 NC_006560.1 + 95093 0.67 0.463238
Target:  5'- cGCGGGCCGGgccgccgccgacgucCgcgaGCGCCGGC-GGCu -3'
miRNA:   3'- cCGCCCGGCU---------------Gac--CGUGGCCGaCCGc -5'
31028 5' -64.9 NC_006560.1 + 148640 0.67 0.460621
Target:  5'- gGGCGGGCCccgccggccggaGACgcggcccaaauacggGGCGCCGug-GGCGg -3'
miRNA:   3'- -CCGCCCGG------------CUGa--------------CCGUGGCcgaCCGC- -5'
31028 5' -64.9 NC_006560.1 + 1990 0.67 0.45975
Target:  5'- gGGcCGGGCCaGCUccagGGCGgCGGCguccucGGCGu -3'
miRNA:   3'- -CC-GCCCGGcUGA----CCGUgGCCGa-----CCGC- -5'
31028 5' -64.9 NC_006560.1 + 15030 0.67 0.45975
Target:  5'- gGGUGcGGCgucggaGACUcGCGCCGGggGGCGa -3'
miRNA:   3'- -CCGC-CCGg-----CUGAcCGUGGCCgaCCGC- -5'
31028 5' -64.9 NC_006560.1 + 101294 0.67 0.45975
Target:  5'- uGGCGGGCCcccgagGACaUGuccacgacGCGCCGcGCgGGCGc -3'
miRNA:   3'- -CCGCCCGG------CUG-AC--------CGUGGC-CGaCCGC- -5'
31028 5' -64.9 NC_006560.1 + 131301 0.67 0.45975
Target:  5'- --gGGGCuCGA--GGC-CCGGCUGGCc -3'
miRNA:   3'- ccgCCCG-GCUgaCCGuGGCCGACCGc -5'
31028 5' -64.9 NC_006560.1 + 74314 0.67 0.45975
Target:  5'- cGGCGGGgaCGACgccGcCGCCGGCggccUGGCu -3'
miRNA:   3'- -CCGCCCg-GCUGac-C-GUGGCCG----ACCGc -5'
31028 5' -64.9 NC_006560.1 + 119750 0.67 0.45975
Target:  5'- uGCGugacGGCCuGACgggGGCgcuguGCCGGgUGGCGg -3'
miRNA:   3'- cCGC----CCGG-CUGa--CCG-----UGGCCgACCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.