miRNA display CGI


Results 41 - 60 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31028 5' -64.9 NC_006560.1 + 11928 0.7 0.292716
Target:  5'- cGCGGGCCcGCaggaGGgGCCGGCgGGCc -3'
miRNA:   3'- cCGCCCGGcUGa---CCgUGGCCGaCCGc -5'
31028 5' -64.9 NC_006560.1 + 11996 0.7 0.299177
Target:  5'- uGCGGGUCGAgcGGCACagGGCgaaGGCGa -3'
miRNA:   3'- cCGCCCGGCUgaCCGUGg-CCGa--CCGC- -5'
31028 5' -64.9 NC_006560.1 + 12319 0.7 0.31243
Target:  5'- aGGCgccccaucgGGGaCCGGa-GGCACCucggGGCUGGCGg -3'
miRNA:   3'- -CCG---------CCC-GGCUgaCCGUGG----CCGACCGC- -5'
31028 5' -64.9 NC_006560.1 + 13554 0.67 0.434054
Target:  5'- gGGCGGGuCCGcCUucuGCuCCGGCgggGGCa -3'
miRNA:   3'- -CCGCCC-GGCuGAc--CGuGGCCGa--CCGc -5'
31028 5' -64.9 NC_006560.1 + 14256 0.7 0.31243
Target:  5'- cGGCGGuggauGUCGcguUGGCGCCGGC-GGCGu -3'
miRNA:   3'- -CCGCC-----CGGCug-ACCGUGGCCGaCCGC- -5'
31028 5' -64.9 NC_006560.1 + 14844 0.7 0.326124
Target:  5'- cGGCGGGgggagcguggCGGCcgGGCGCCGGgggGGCGg -3'
miRNA:   3'- -CCGCCCg---------GCUGa-CCGUGGCCga-CCGC- -5'
31028 5' -64.9 NC_006560.1 + 15030 0.67 0.45975
Target:  5'- gGGUGcGGCgucggaGACUcGCGCCGGggGGCGa -3'
miRNA:   3'- -CCGC-CCGg-----CUGAcCGUGGCCgaCCGC- -5'
31028 5' -64.9 NC_006560.1 + 15262 0.67 0.434054
Target:  5'- aGGCGGacGCCGGg-GGCgcggucgcgggaGCCGGCgcGGCGg -3'
miRNA:   3'- -CCGCC--CGGCUgaCCG------------UGGCCGa-CCGC- -5'
31028 5' -64.9 NC_006560.1 + 15550 0.66 0.531881
Target:  5'- cGGCcaGGCCGACcaggaGGCuCUGGggGGCGg -3'
miRNA:   3'- -CCGc-CCGGCUGa----CCGuGGCCgaCCGC- -5'
31028 5' -64.9 NC_006560.1 + 15721 0.8 0.064484
Target:  5'- cGGCGGGCCGGCacGGgGCCGGCacgccgggGGCGc -3'
miRNA:   3'- -CCGCCCGGCUGa-CCgUGGCCGa-------CCGC- -5'
31028 5' -64.9 NC_006560.1 + 15782 0.77 0.098757
Target:  5'- cGgGGGCCGGCagggcccGGCGCCGGC-GGCGa -3'
miRNA:   3'- cCgCCCGGCUGa------CCGUGGCCGaCCGC- -5'
31028 5' -64.9 NC_006560.1 + 15877 0.7 0.31243
Target:  5'- cGGCguggGGGCCGGCgaccGGCGCCaGCagcgaGGCGu -3'
miRNA:   3'- -CCG----CCCGGCUGa---CCGUGGcCGa----CCGC- -5'
31028 5' -64.9 NC_006560.1 + 16021 0.67 0.442528
Target:  5'- -cCGGaGCgCGACggGGCGCCGGCaccccccGGCGu -3'
miRNA:   3'- ccGCC-CG-GCUGa-CCGUGGCCGa------CCGC- -5'
31028 5' -64.9 NC_006560.1 + 16210 0.68 0.409211
Target:  5'- cGGCGGaGCCGggcccGCgGGC-CCGGCaucgucgaGGCGg -3'
miRNA:   3'- -CCGCC-CGGC-----UGaCCGuGGCCGa-------CCGC- -5'
31028 5' -64.9 NC_006560.1 + 16272 0.69 0.377503
Target:  5'- cGGCGcgcgcggagacGGCCGACcccUGGgGCgCGGCggGGCGc -3'
miRNA:   3'- -CCGC-----------CCGGCUG---ACCgUG-GCCGa-CCGC- -5'
31028 5' -64.9 NC_006560.1 + 16377 0.71 0.262041
Target:  5'- gGGgGGGCaUGGC-GGCGCgGGCgGGCGu -3'
miRNA:   3'- -CCgCCCG-GCUGaCCGUGgCCGaCCGC- -5'
31028 5' -64.9 NC_006560.1 + 16629 0.67 0.477323
Target:  5'- gGGCGGGUguACgccgGGCGgCGGUUGcGCGc -3'
miRNA:   3'- -CCGCCCGgcUGa---CCGUgGCCGAC-CGC- -5'
31028 5' -64.9 NC_006560.1 + 18937 0.71 0.286364
Target:  5'- cGGCGuGCCGcGCggGGC-CCGGCgGGCGc -3'
miRNA:   3'- -CCGCcCGGC-UGa-CCGuGGCCGaCCGC- -5'
31028 5' -64.9 NC_006560.1 + 19399 0.67 0.442528
Target:  5'- cGGCacGGGCCGggcgagucgccGCggcGGCGCuCGGCUGaGCu -3'
miRNA:   3'- -CCG--CCCGGC-----------UGa--CCGUG-GCCGAC-CGc -5'
31028 5' -64.9 NC_006560.1 + 19666 0.69 0.369838
Target:  5'- aGGCGGcuGUCGucgucGCUGGCGgCGucGCUGGCGu -3'
miRNA:   3'- -CCGCC--CGGC-----UGACCGUgGC--CGACCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.