miRNA display CGI


Results 61 - 80 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31028 5' -64.9 NC_006560.1 + 20593 0.67 0.477323
Target:  5'- uGGUGucGGUCGGCaUGGCGCgGGUgguggGGCa -3'
miRNA:   3'- -CCGC--CCGGCUG-ACCGUGgCCGa----CCGc -5'
31028 5' -64.9 NC_006560.1 + 20929 0.74 0.181234
Target:  5'- aGGaGGGCCGGC-GGCGgCGGCgacGGCGu -3'
miRNA:   3'- -CCgCCCGGCUGaCCGUgGCCGa--CCGC- -5'
31028 5' -64.9 NC_006560.1 + 20961 0.81 0.052502
Target:  5'- cGGCGGGCCGGCcgcGGCgccGCCGGCUuuaugucGGCGg -3'
miRNA:   3'- -CCGCCCGGCUGa--CCG---UGGCCGA-------CCGC- -5'
31028 5' -64.9 NC_006560.1 + 21032 0.75 0.146164
Target:  5'- gGGCGGGCCGggGCggGGCGCCcGCgcGGCGu -3'
miRNA:   3'- -CCGCCCGGC--UGa-CCGUGGcCGa-CCGC- -5'
31028 5' -64.9 NC_006560.1 + 21726 0.72 0.223554
Target:  5'- gGGCGGaGCCGGCcgGGCGCCGcccgucGCcGGCc -3'
miRNA:   3'- -CCGCC-CGGCUGa-CCGUGGC------CGaCCGc -5'
31028 5' -64.9 NC_006560.1 + 23034 0.66 0.495221
Target:  5'- aGGCcauGGGCUGGCUGcagaacccGCGCgugaCGGCcGGCGa -3'
miRNA:   3'- -CCG---CCCGGCUGAC--------CGUG----GCCGaCCGC- -5'
31028 5' -64.9 NC_006560.1 + 23374 0.66 0.531881
Target:  5'- cGGCcucGCCGGCUacGGCGCC-GCgGGCGu -3'
miRNA:   3'- -CCGcc-CGGCUGA--CCGUGGcCGaCCGC- -5'
31028 5' -64.9 NC_006560.1 + 23424 0.67 0.486232
Target:  5'- uGGCGGccgcccucgccGCCGACcgcGGCGCCGcccccGC-GGCGg -3'
miRNA:   3'- -CCGCC-----------CGGCUGa--CCGUGGC-----CGaCCGC- -5'
31028 5' -64.9 NC_006560.1 + 23764 0.66 0.495221
Target:  5'- cGUGGGCCucgucGCcGGCGCCGccgcgccgcuGCUGGCc -3'
miRNA:   3'- cCGCCCGGc----UGaCCGUGGC----------CGACCGc -5'
31028 5' -64.9 NC_006560.1 + 24096 0.79 0.071336
Target:  5'- cGGCGGGcCCGACccccGCGgCGGCUGGCGc -3'
miRNA:   3'- -CCGCCC-GGCUGac--CGUgGCCGACCGC- -5'
31028 5' -64.9 NC_006560.1 + 24532 0.66 0.495221
Target:  5'- uGCGGGcCCGACacGGcCGCCugGGCcGGCa -3'
miRNA:   3'- cCGCCC-GGCUGa-CC-GUGG--CCGaCCGc -5'
31028 5' -64.9 NC_006560.1 + 25465 0.67 0.486232
Target:  5'- cGGCGGccGCCGAggaCUGGUAgCCGGCgccGCc -3'
miRNA:   3'- -CCGCC--CGGCU---GACCGU-GGCCGac-CGc -5'
31028 5' -64.9 NC_006560.1 + 25987 0.67 0.477323
Target:  5'- gGGCgaGGGCCG-CggggggaggGGCGCCGuGCgGGCc -3'
miRNA:   3'- -CCG--CCCGGCuGa--------CCGUGGC-CGaCCGc -5'
31028 5' -64.9 NC_006560.1 + 26076 0.7 0.319222
Target:  5'- uGCGGGCgGAacccgGGCGgcCCGGCgcGGCGg -3'
miRNA:   3'- cCGCCCGgCUga---CCGU--GGCCGa-CCGC- -5'
31028 5' -64.9 NC_006560.1 + 26365 0.7 0.326124
Target:  5'- cGGCGGGgCGGagacGGCGCCccGGCcggGGCGc -3'
miRNA:   3'- -CCGCCCgGCUga--CCGUGG--CCGa--CCGC- -5'
31028 5' -64.9 NC_006560.1 + 26479 0.71 0.25623
Target:  5'- aGC-GGCCGGC-GGCcCCGGCggggGGCGg -3'
miRNA:   3'- cCGcCCGGCUGaCCGuGGCCGa---CCGC- -5'
31028 5' -64.9 NC_006560.1 + 26848 0.68 0.409211
Target:  5'- gGGCGcGGCCGGCcgccGCcccCCGGCgcccgUGGCGg -3'
miRNA:   3'- -CCGC-CCGGCUGac--CGu--GGCCG-----ACCGC- -5'
31028 5' -64.9 NC_006560.1 + 26972 0.68 0.409211
Target:  5'- aGGCGGGgCGGgggGGgGCgGGCgcacgGGCGg -3'
miRNA:   3'- -CCGCCCgGCUga-CCgUGgCCGa----CCGC- -5'
31028 5' -64.9 NC_006560.1 + 27241 0.68 0.402737
Target:  5'- gGGCgGGGCCGGCcccgcccaaacccGCGCCGGCcgcggccgcgggGGCGg -3'
miRNA:   3'- -CCG-CCCGGCUGac-----------CGUGGCCGa-----------CCGC- -5'
31028 5' -64.9 NC_006560.1 + 27632 0.71 0.286364
Target:  5'- cGGCGGGCgCGGCcgGGCGCgGGgCgcGGCc -3'
miRNA:   3'- -CCGCCCG-GCUGa-CCGUGgCC-Ga-CCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.