miRNA display CGI


Results 81 - 100 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31028 5' -64.9 NC_006560.1 + 28429 0.69 0.333137
Target:  5'- gGGCGGGCCGAgggggaGGCGCCcGGC-GGa- -3'
miRNA:   3'- -CCGCCCGGCUga----CCGUGG-CCGaCCgc -5'
31028 5' -64.9 NC_006560.1 + 31160 0.67 0.445943
Target:  5'- aGCGGGCCucGCUGcccgcgccccccgacGCGCCGGCccgcccGGCGc -3'
miRNA:   3'- cCGCCCGGc-UGAC---------------CGUGGCCGa-----CCGC- -5'
31028 5' -64.9 NC_006560.1 + 32085 0.68 0.425675
Target:  5'- gGGCGGGCgggggCGGCaGGUggGgCGGCaGGCGg -3'
miRNA:   3'- -CCGCCCG-----GCUGaCCG--UgGCCGaCCGC- -5'
31028 5' -64.9 NC_006560.1 + 32153 0.68 0.417394
Target:  5'- gGGCgGGGCCgGGCguccccGGCGCCGag-GGCGg -3'
miRNA:   3'- -CCG-CCCGG-CUGa-----CCGUGGCcgaCCGC- -5'
31028 5' -64.9 NC_006560.1 + 32744 0.69 0.34749
Target:  5'- gGGCGGGgcCCGGC--GCGCCGGCcGGgGu -3'
miRNA:   3'- -CCGCCC--GGCUGacCGUGGCCGaCCgC- -5'
31028 5' -64.9 NC_006560.1 + 32797 0.66 0.522618
Target:  5'- gGGgGGGCCGGg-GGCGC-GGCcGGgGa -3'
miRNA:   3'- -CCgCCCGGCUgaCCGUGgCCGaCCgC- -5'
31028 5' -64.9 NC_006560.1 + 32924 0.69 0.375192
Target:  5'- cGgGGGCCGAg-GGCagggggccgucgccGCCGGC-GGCGa -3'
miRNA:   3'- cCgCCCGGCUgaCCG--------------UGGCCGaCCGC- -5'
31028 5' -64.9 NC_006560.1 + 32982 0.68 0.385274
Target:  5'- aGGgGGGUgGGCgGGaagGCCGGCgagGGCa -3'
miRNA:   3'- -CCgCCCGgCUGaCCg--UGGCCGa--CCGc -5'
31028 5' -64.9 NC_006560.1 + 33212 0.69 0.362281
Target:  5'- cGCGGGgCaGACggGGCagGCCGGCgacgGGCa -3'
miRNA:   3'- cCGCCCgG-CUGa-CCG--UGGCCGa---CCGc -5'
31028 5' -64.9 NC_006560.1 + 33486 0.72 0.234034
Target:  5'- cGGgGGGCCGccggcagggagGCgGGCGCCGGCccGGgGg -3'
miRNA:   3'- -CCgCCCGGC-----------UGaCCGUGGCCGa-CCgC- -5'
31028 5' -64.9 NC_006560.1 + 33631 0.71 0.273986
Target:  5'- gGGgGGGgCGGggGGCGCCGGg-GGCGg -3'
miRNA:   3'- -CCgCCCgGCUgaCCGUGGCCgaCCGC- -5'
31028 5' -64.9 NC_006560.1 + 33659 0.74 0.160916
Target:  5'- cGCGGGCCG-CUuaGGCGagcCCGGCgGGCGu -3'
miRNA:   3'- cCGCCCGGCuGA--CCGU---GGCCGaCCGC- -5'
31028 5' -64.9 NC_006560.1 + 33822 0.66 0.504283
Target:  5'- gGGCggGGGUCGGCgGGggUCGGCcgcgGGCGu -3'
miRNA:   3'- -CCG--CCCGGCUGaCCguGGCCGa---CCGC- -5'
31028 5' -64.9 NC_006560.1 + 35005 0.67 0.442528
Target:  5'- cGCGGGCCGGCcgGGCGCCcccuccGGUccGCc -3'
miRNA:   3'- cCGCCCGGCUGa-CCGUGG------CCGacCGc -5'
31028 5' -64.9 NC_006560.1 + 36101 0.71 0.286364
Target:  5'- cGGCgGGGCCGcgGCgGGCACCGG--GGCc -3'
miRNA:   3'- -CCG-CCCGGC--UGaCCGUGGCCgaCCGc -5'
31028 5' -64.9 NC_006560.1 + 36908 0.7 0.319222
Target:  5'- cGGCgccGGGCCGA---GCGCCGGagcguCUGGCGg -3'
miRNA:   3'- -CCG---CCCGGCUgacCGUGGCC-----GACCGC- -5'
31028 5' -64.9 NC_006560.1 + 39461 0.67 0.468494
Target:  5'- uGCGcGGUCGGCgc-CGCCGGCgcGGCGa -3'
miRNA:   3'- cCGC-CCGGCUGaccGUGGCCGa-CCGC- -5'
31028 5' -64.9 NC_006560.1 + 39596 0.67 0.477323
Target:  5'- uGGCGGgcgcGCCGGCccgcgGaGCGCCgcGGCgGGCGu -3'
miRNA:   3'- -CCGCC----CGGCUGa----C-CGUGG--CCGaCCGC- -5'
31028 5' -64.9 NC_006560.1 + 39956 0.74 0.168785
Target:  5'- aGGCGGGgCGGC-GGCGCgGGC-GGCu -3'
miRNA:   3'- -CCGCCCgGCUGaCCGUGgCCGaCCGc -5'
31028 5' -64.9 NC_006560.1 + 40318 0.67 0.442528
Target:  5'- gGGCGGGCgCGGCcccuucuCCGGCccgGGCGg -3'
miRNA:   3'- -CCGCCCG-GCUGaccgu--GGCCGa--CCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.