miRNA display CGI


Results 101 - 120 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31028 5' -64.9 NC_006560.1 + 40539 0.68 0.393149
Target:  5'- uGGCGGGCCGG-UGGUACaGGaaGGUc -3'
miRNA:   3'- -CCGCCCGGCUgACCGUGgCCgaCCGc -5'
31028 5' -64.9 NC_006560.1 + 41035 0.67 0.486232
Target:  5'- -aCGGGCCGcaccGCguagauGCAUCGGCgGGCGg -3'
miRNA:   3'- ccGCCCGGC----UGac----CGUGGCCGaCCGC- -5'
31028 5' -64.9 NC_006560.1 + 41168 0.69 0.336684
Target:  5'- cGGCGGGUCGGCgucaacggugaacagGGUccggaGCCGGUugcugucgcauuugcUGGCGa -3'
miRNA:   3'- -CCGCCCGGCUGa--------------CCG-----UGGCCG---------------ACCGC- -5'
31028 5' -64.9 NC_006560.1 + 42844 0.69 0.377503
Target:  5'- gGGCGGGgCGGCgGGCcaGCCGuggGGCGu -3'
miRNA:   3'- -CCGCCCgGCUGaCCG--UGGCcgaCCGC- -5'
31028 5' -64.9 NC_006560.1 + 43353 0.76 0.120307
Target:  5'- cGCGGGCCcGCgGGCguACUGGCUGGUGc -3'
miRNA:   3'- cCGCCCGGcUGaCCG--UGGCCGACCGC- -5'
31028 5' -64.9 NC_006560.1 + 43419 0.66 0.513417
Target:  5'- cGCGGcGCCGGg-GGCGUCGGCgcgcGGCa -3'
miRNA:   3'- cCGCC-CGGCUgaCCGUGGCCGa---CCGc -5'
31028 5' -64.9 NC_006560.1 + 43853 0.66 0.513417
Target:  5'- uGCGGG-CGAC-GuGCGCCGGCgccaGCGg -3'
miRNA:   3'- cCGCCCgGCUGaC-CGUGGCCGac--CGC- -5'
31028 5' -64.9 NC_006560.1 + 46092 0.71 0.272167
Target:  5'- aGGCGGcGCCGcccGCgggGGCaaaagccaccucccGCCGGUUGGCc -3'
miRNA:   3'- -CCGCC-CGGC---UGa--CCG--------------UGGCCGACCGc -5'
31028 5' -64.9 NC_006560.1 + 47010 0.71 0.280121
Target:  5'- cGCGGGCCGcgcccGCgGGCGCUcGCaGGCGg -3'
miRNA:   3'- cCGCCCGGC-----UGaCCGUGGcCGaCCGC- -5'
31028 5' -64.9 NC_006560.1 + 51485 0.66 0.5125
Target:  5'- cGGCGGccccgagGCCGA--GGC-CCGGCccGGCGc -3'
miRNA:   3'- -CCGCC-------CGGCUgaCCGuGGCCGa-CCGC- -5'
31028 5' -64.9 NC_006560.1 + 51980 0.73 0.203791
Target:  5'- cGGCGGG-CGGCgGGCcuGCCGGCgcGGUGa -3'
miRNA:   3'- -CCGCCCgGCUGaCCG--UGGCCGa-CCGC- -5'
31028 5' -64.9 NC_006560.1 + 52230 0.73 0.199093
Target:  5'- uGGCGaGCUGcCUGGCcCCGGCcGGCGc -3'
miRNA:   3'- -CCGCcCGGCuGACCGuGGCCGaCCGC- -5'
31028 5' -64.9 NC_006560.1 + 52336 0.67 0.468494
Target:  5'- cGGCGcGGCCGug-GGCGCCcuGC-GGCa -3'
miRNA:   3'- -CCGC-CCGGCugaCCGUGGc-CGaCCGc -5'
31028 5' -64.9 NC_006560.1 + 52518 0.66 0.513417
Target:  5'- cGGCGGaGUCc-CUGGCGgaGGCgggGGCGu -3'
miRNA:   3'- -CCGCC-CGGcuGACCGUggCCGa--CCGC- -5'
31028 5' -64.9 NC_006560.1 + 53832 0.79 0.07502
Target:  5'- cGGCGGGCCGGCccGG-GCCGGCcGGCa -3'
miRNA:   3'- -CCGCCCGGCUGa-CCgUGGCCGaCCGc -5'
31028 5' -64.9 NC_006560.1 + 54137 0.67 0.486232
Target:  5'- aGCGGGCgcccuCGACcc-CACCGGCgaGGCGa -3'
miRNA:   3'- cCGCCCG-----GCUGaccGUGGCCGa-CCGC- -5'
31028 5' -64.9 NC_006560.1 + 54907 0.66 0.504283
Target:  5'- gGGCGGuaGCCGA--GGCGCUcgggGGCcggGGCGg -3'
miRNA:   3'- -CCGCC--CGGCUgaCCGUGG----CCGa--CCGC- -5'
31028 5' -64.9 NC_006560.1 + 55277 0.66 0.529096
Target:  5'- cGGCGacGCCGGCccacucgagcgcggUGGuCACCuGCUGGCc -3'
miRNA:   3'- -CCGCc-CGGCUG--------------ACC-GUGGcCGACCGc -5'
31028 5' -64.9 NC_006560.1 + 55601 0.66 0.517089
Target:  5'- uGGUcGGCCG-CggcagcaccgucggGGCACCGG-UGGCGu -3'
miRNA:   3'- -CCGcCCGGCuGa-------------CCGUGGCCgACCGC- -5'
31028 5' -64.9 NC_006560.1 + 58243 0.66 0.522618
Target:  5'- gGGCcggGGGCCGcCgaGGCgagccGCCGGCcucGGCGu -3'
miRNA:   3'- -CCG---CCCGGCuGa-CCG-----UGGCCGa--CCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.