miRNA display CGI


Results 21 - 40 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31028 5' -64.9 NC_006560.1 + 142529 0.68 0.417394
Target:  5'- gGGCgGGGCCccg-GGC-CCGGCggccgGGCGc -3'
miRNA:   3'- -CCG-CCCGGcugaCCGuGGCCGa----CCGC- -5'
31028 5' -64.9 NC_006560.1 + 142295 0.79 0.078886
Target:  5'- cGGCGGGCgCGGCcGGCGCCGGCcgcUGGa- -3'
miRNA:   3'- -CCGCCCG-GCUGaCCGUGGCCG---ACCgc -5'
31028 5' -64.9 NC_006560.1 + 142181 0.66 0.531881
Target:  5'- cGCGGGCCcuaauGGgaGGCG-CGGCcuccgGGCGg -3'
miRNA:   3'- cCGCCCGG-----CUgaCCGUgGCCGa----CCGC- -5'
31028 5' -64.9 NC_006560.1 + 141567 0.73 0.212983
Target:  5'- cGGCGGGcCCGGCUcgaccccGGCGgCGGC-GGCc -3'
miRNA:   3'- -CCGCCC-GGCUGA-------CCGUgGCCGaCCGc -5'
31028 5' -64.9 NC_006560.1 + 140473 0.7 0.31243
Target:  5'- cGGCGGGCCGGgggGGCGgaggaGGUgggGGCGg -3'
miRNA:   3'- -CCGCCCGGCUga-CCGUgg---CCGa--CCGC- -5'
31028 5' -64.9 NC_006560.1 + 140021 0.73 0.203791
Target:  5'- cGCGaGGCCGugggcCUGGC-CgGGCUGGUGa -3'
miRNA:   3'- cCGC-CCGGCu----GACCGuGgCCGACCGC- -5'
31028 5' -64.9 NC_006560.1 + 138798 0.68 0.401129
Target:  5'- aGGCGGGUgGACgugcGGCGCCuggGGaccaccggGGCGa -3'
miRNA:   3'- -CCGCCCGgCUGa---CCGUGG---CCga------CCGC- -5'
31028 5' -64.9 NC_006560.1 + 138312 0.66 0.495221
Target:  5'- cGUGGGCCGGuCgGaGCGCCagcGGCUGGa- -3'
miRNA:   3'- cCGCCCGGCU-GaC-CGUGG---CCGACCgc -5'
31028 5' -64.9 NC_006560.1 + 137619 0.71 0.286364
Target:  5'- aGGUGcGCCGGC-GGCACgCGGCcgcggggcUGGCGg -3'
miRNA:   3'- -CCGCcCGGCUGaCCGUG-GCCG--------ACCGC- -5'
31028 5' -64.9 NC_006560.1 + 137220 0.71 0.279502
Target:  5'- aGCGGGCguuCGACUucaagacgcugggGGCGCgGGCggcgGGCGa -3'
miRNA:   3'- cCGCCCG---GCUGA-------------CCGUGgCCGa---CCGC- -5'
31028 5' -64.9 NC_006560.1 + 136064 0.7 0.31243
Target:  5'- gGGCcuGGCCGAg-GGCagccucACgCGGCUGGCGg -3'
miRNA:   3'- -CCGc-CCGGCUgaCCG------UG-GCCGACCGC- -5'
31028 5' -64.9 NC_006560.1 + 134888 0.66 0.513417
Target:  5'- cGCgGGGCCGGCgcauCACCGGCacgaGGCc -3'
miRNA:   3'- cCG-CCCGGCUGacc-GUGGCCGa---CCGc -5'
31028 5' -64.9 NC_006560.1 + 134445 0.66 0.531881
Target:  5'- gGGCccGGCUGAC-GGCGCgGGC-GGCc -3'
miRNA:   3'- -CCGc-CCGGCUGaCCGUGgCCGaCCGc -5'
31028 5' -64.9 NC_006560.1 + 134192 0.72 0.239427
Target:  5'- uGGCGGaGCUGcuGCUGGCGCgGGCccGCGg -3'
miRNA:   3'- -CCGCC-CGGC--UGACCGUGgCCGacCGC- -5'
31028 5' -64.9 NC_006560.1 + 133540 0.78 0.091657
Target:  5'- gGGCGGggaGCCGGC-GGCGCgCGGCgUGGCGg -3'
miRNA:   3'- -CCGCC---CGGCUGaCCGUG-GCCG-ACCGC- -5'
31028 5' -64.9 NC_006560.1 + 133468 0.68 0.393149
Target:  5'- cGCGGGCUccggGGCGuCCGGCgucuacgGGCGa -3'
miRNA:   3'- cCGCCCGGcugaCCGU-GGCCGa------CCGC- -5'
31028 5' -64.9 NC_006560.1 + 133136 0.67 0.486232
Target:  5'- cGGUGGGCgGcCUGGC-CgCGGCaGcGCGc -3'
miRNA:   3'- -CCGCCCGgCuGACCGuG-GCCGaC-CGC- -5'
31028 5' -64.9 NC_006560.1 + 132688 0.69 0.333137
Target:  5'- uGGUgccgGGGCgGACcGGCAgccgaaagacCCGGCUGGgGg -3'
miRNA:   3'- -CCG----CCCGgCUGaCCGU----------GGCCGACCgC- -5'
31028 5' -64.9 NC_006560.1 + 132320 0.67 0.468494
Target:  5'- cGGCGcGGCCGGg-GcGCACgCGGUcgcggGGCGg -3'
miRNA:   3'- -CCGC-CCGGCUgaC-CGUG-GCCGa----CCGC- -5'
31028 5' -64.9 NC_006560.1 + 131879 0.68 0.385274
Target:  5'- gGGCGcGGUCGcggcguacGCggagGGCGCCGGCgcggagaaGGCGc -3'
miRNA:   3'- -CCGC-CCGGC--------UGa---CCGUGGCCGa-------CCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.