miRNA display CGI


Results 61 - 80 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31028 5' -64.9 NC_006560.1 + 122183 0.66 0.503374
Target:  5'- aGCGGagcgacgcgaccuGCUGAUUGcGCACCGGC-GGUa -3'
miRNA:   3'- cCGCC-------------CGGCUGAC-CGUGGCCGaCCGc -5'
31028 5' -64.9 NC_006560.1 + 121987 0.66 0.495221
Target:  5'- uGCGGGCCG-CgGuGUACCGGgaGGa- -3'
miRNA:   3'- cCGCCCGGCuGaC-CGUGGCCgaCCgc -5'
31028 5' -64.9 NC_006560.1 + 121938 0.69 0.34749
Target:  5'- cGCGGGCCcgggcgcgcGGCUcuGCGCCGGCgccUGGCc -3'
miRNA:   3'- cCGCCCGG---------CUGAc-CGUGGCCG---ACCGc -5'
31028 5' -64.9 NC_006560.1 + 121565 0.66 0.531881
Target:  5'- gGGCGGGaCCaGGCUauuaaacagcaGGCGCCGcGCcacGGCc -3'
miRNA:   3'- -CCGCCC-GG-CUGA-----------CCGUGGC-CGa--CCGc -5'
31028 5' -64.9 NC_006560.1 + 120524 0.66 0.529096
Target:  5'- aGCGGggcGCCGAgaGGauccggcccgaaucCGCCGGgUGGCGc -3'
miRNA:   3'- cCGCC---CGGCUgaCC--------------GUGGCCgACCGC- -5'
31028 5' -64.9 NC_006560.1 + 119750 0.67 0.45975
Target:  5'- uGCGugacGGCCuGACgggGGCgcuguGCCGGgUGGCGg -3'
miRNA:   3'- cCGC----CCGG-CUGa--CCG-----UGGCCgACCGC- -5'
31028 5' -64.9 NC_006560.1 + 119113 0.72 0.218466
Target:  5'- aGCGGGCCuuccGCgGGCGCCGGUUcgugccgccgGGCGa -3'
miRNA:   3'- cCGCCCGGc---UGaCCGUGGCCGA----------CCGC- -5'
31028 5' -64.9 NC_006560.1 + 118519 0.69 0.343138
Target:  5'- cGCGGGUgGgaggcGCUGGCcgggggggaccgccCCGGCUGGCu -3'
miRNA:   3'- cCGCCCGgC-----UGACCGu-------------GGCCGACCGc -5'
31028 5' -64.9 NC_006560.1 + 118319 0.71 0.25623
Target:  5'- aGGC-GGCCGcCgUGGCGgCGGCcGGCGg -3'
miRNA:   3'- -CCGcCCGGCuG-ACCGUgGCCGaCCGC- -5'
31028 5' -64.9 NC_006560.1 + 118211 0.68 0.429015
Target:  5'- aGCGGGCCgugcggGACgUGGCccGCCGGCacccgguccgcgcgGGCGc -3'
miRNA:   3'- cCGCCCGG------CUG-ACCG--UGGCCGa-------------CCGC- -5'
31028 5' -64.9 NC_006560.1 + 118050 0.73 0.188644
Target:  5'- gGGCGGGcCCGGCgccgccgcgGGCGCCcccgccgagcucgcGGCgGGCGa -3'
miRNA:   3'- -CCGCCC-GGCUGa--------CCGUGG--------------CCGaCCGC- -5'
31028 5' -64.9 NC_006560.1 + 118004 0.68 0.424843
Target:  5'- cGGCGgcGGCCGAggccgcggcgcacCUGGCGgCggGGCUcGGCGg -3'
miRNA:   3'- -CCGC--CCGGCU-------------GACCGUgG--CCGA-CCGC- -5'
31028 5' -64.9 NC_006560.1 + 117969 0.66 0.504283
Target:  5'- -cCGGuaCGugUGGCGCCugGGCgcGGCGg -3'
miRNA:   3'- ccGCCcgGCugACCGUGG--CCGa-CCGC- -5'
31028 5' -64.9 NC_006560.1 + 116531 0.66 0.5125
Target:  5'- aGGCGGGCgGcgaUGGCGaCGGCcgaguccUGGCu -3'
miRNA:   3'- -CCGCCCGgCug-ACCGUgGCCG-------ACCGc -5'
31028 5' -64.9 NC_006560.1 + 115114 0.68 0.417394
Target:  5'- cGGC-GGCa-GCUGGCGCUGGCcgacgUGGCc -3'
miRNA:   3'- -CCGcCCGgcUGACCGUGGCCG-----ACCGc -5'
31028 5' -64.9 NC_006560.1 + 114184 0.66 0.526316
Target:  5'- cGCGGGCaacCGGCUGGgcccggcccagccccUGCCGGUcuuUGGCu -3'
miRNA:   3'- cCGCCCG---GCUGACC---------------GUGGCCG---ACCGc -5'
31028 5' -64.9 NC_006560.1 + 113003 0.66 0.522618
Target:  5'- gGGCGGGCaCGACcccgucuacgUGGCGgCCugcaaccugGGCacGGCGg -3'
miRNA:   3'- -CCGCCCG-GCUG----------ACCGU-GG---------CCGa-CCGC- -5'
31028 5' -64.9 NC_006560.1 + 112837 0.66 0.531881
Target:  5'- uGGUGGG-CGACUucacgcucccggGGC-CCGaGCUcGGCGg -3'
miRNA:   3'- -CCGCCCgGCUGA------------CCGuGGC-CGA-CCGC- -5'
31028 5' -64.9 NC_006560.1 + 112142 0.67 0.442528
Target:  5'- cGGUGGGCgGGCUcaaccaGGaGCCGGUggacgcGGCGa -3'
miRNA:   3'- -CCGCCCGgCUGA------CCgUGGCCGa-----CCGC- -5'
31028 5' -64.9 NC_006560.1 + 111204 0.69 0.369078
Target:  5'- uGCGGGCCauccagcaGCUGGCccgcaacgugcagGCCGuGCUGGgGg -3'
miRNA:   3'- cCGCCCGGc-------UGACCG-------------UGGC-CGACCgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.