miRNA display CGI


Results 81 - 100 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31028 5' -64.9 NC_006560.1 + 110145 0.66 0.513417
Target:  5'- -aCGGGCCGGCUGuaCGCCccGCUGuGCGu -3'
miRNA:   3'- ccGCCCGGCUGACc-GUGGc-CGAC-CGC- -5'
31028 5' -64.9 NC_006560.1 + 108495 0.72 0.239427
Target:  5'- gGGCGuGGCCGcCggggggagGGCgGCCGGC-GGCGg -3'
miRNA:   3'- -CCGC-CCGGCuGa-------CCG-UGGCCGaCCGC- -5'
31028 5' -64.9 NC_006560.1 + 106579 0.66 0.495221
Target:  5'- cGgGGGCCGGggcCUGGCcgccCCGGUcguccGGCGg -3'
miRNA:   3'- cCgCCCGGCU---GACCGu---GGCCGa----CCGC- -5'
31028 5' -64.9 NC_006560.1 + 104423 1.08 0.000542
Target:  5'- uGGCGGGCCGACUGGCACCGGCUGGCGc -3'
miRNA:   3'- -CCGCCCGGCUGACCGUGGCCGACCGC- -5'
31028 5' -64.9 NC_006560.1 + 101294 0.67 0.45975
Target:  5'- uGGCGGGCCcccgagGACaUGuccacgacGCGCCGcGCgGGCGc -3'
miRNA:   3'- -CCGCCCGG------CUG-AC--------CGUGGC-CGaCCGC- -5'
31028 5' -64.9 NC_006560.1 + 100810 0.66 0.504283
Target:  5'- cGGCGGgggccauagcGCgGGCgcgGGgGCCGGCggaggggaggGGCGg -3'
miRNA:   3'- -CCGCC----------CGgCUGa--CCgUGGCCGa---------CCGC- -5'
31028 5' -64.9 NC_006560.1 + 100494 0.69 0.354831
Target:  5'- cGGgGGGCCG-C-GGCGCuCGaagaucgcggcGCUGGCGg -3'
miRNA:   3'- -CCgCCCGGCuGaCCGUG-GC-----------CGACCGC- -5'
31028 5' -64.9 NC_006560.1 + 99936 0.67 0.442528
Target:  5'- gGGCGcGGCgGACgggagGGCGCgGGUacGCGg -3'
miRNA:   3'- -CCGC-CCGgCUGa----CCGUGgCCGacCGC- -5'
31028 5' -64.9 NC_006560.1 + 99872 0.69 0.377503
Target:  5'- cGGgGGGCgCGGgggucgUGGCGgCGGCgGGCGg -3'
miRNA:   3'- -CCgCCCG-GCUg-----ACCGUgGCCGaCCGC- -5'
31028 5' -64.9 NC_006560.1 + 99612 0.71 0.25623
Target:  5'- cGGCGGGgggCGGCUGGCGgucCgCGGCgaUGGCGc -3'
miRNA:   3'- -CCGCCCg--GCUGACCGU---G-GCCG--ACCGC- -5'
31028 5' -64.9 NC_006560.1 + 99329 0.68 0.40435
Target:  5'- uGCGcGCCGACgGccgccgccucccacuGCGCCGGCUGGgCGu -3'
miRNA:   3'- cCGCcCGGCUGaC---------------CGUGGCCGACC-GC- -5'
31028 5' -64.9 NC_006560.1 + 99281 0.67 0.451094
Target:  5'- gGGUGGGCCGGCggcugGGguCgGgGgaGGUGg -3'
miRNA:   3'- -CCGCCCGGCUGa----CCguGgC-CgaCCGC- -5'
31028 5' -64.9 NC_006560.1 + 99225 0.66 0.522618
Target:  5'- cGGCGGGCUG-C-GGC-CCGGaaacgaggggGGCGu -3'
miRNA:   3'- -CCGCCCGGCuGaCCGuGGCCga--------CCGC- -5'
31028 5' -64.9 NC_006560.1 + 98432 0.69 0.354831
Target:  5'- cGGCGcGCCG-CUGGCgGgCGGC-GGCGa -3'
miRNA:   3'- -CCGCcCGGCuGACCG-UgGCCGaCCGC- -5'
31028 5' -64.9 NC_006560.1 + 98305 0.68 0.401129
Target:  5'- uGGCcgugGGGCUG-CUGGUcCUggcggGGCUGGCGg -3'
miRNA:   3'- -CCG----CCCGGCuGACCGuGG-----CCGACCGC- -5'
31028 5' -64.9 NC_006560.1 + 97381 0.67 0.442528
Target:  5'- cGGC-GGCCGGCcgggGGCgACCccgGGgaGGCGg -3'
miRNA:   3'- -CCGcCCGGCUGa---CCG-UGG---CCgaCCGC- -5'
31028 5' -64.9 NC_006560.1 + 95575 0.7 0.299177
Target:  5'- uGgGGGCCGGg-GGCGCCGGCaccgagugGGCc -3'
miRNA:   3'- cCgCCCGGCUgaCCGUGGCCGa-------CCGc -5'
31028 5' -64.9 NC_006560.1 + 95093 0.67 0.463238
Target:  5'- cGCGGGCCGGgccgccgccgacgucCgcgaGCGCCGGC-GGCu -3'
miRNA:   3'- cCGCCCGGCU---------------Gac--CGUGGCCGaCCGc -5'
31028 5' -64.9 NC_006560.1 + 95027 0.69 0.340259
Target:  5'- aGGCgGGGCCGGCgccgcGGCcggggaGCCGGCccGCGa -3'
miRNA:   3'- -CCG-CCCGGCUGa----CCG------UGGCCGacCGC- -5'
31028 5' -64.9 NC_006560.1 + 94316 0.66 0.513417
Target:  5'- cGGCcaaccaGGGCgCGACcGuCGCCcggcGGCUGGCGg -3'
miRNA:   3'- -CCG------CCCG-GCUGaCcGUGG----CCGACCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.