miRNA display CGI


Results 41 - 60 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31028 5' -64.9 NC_006560.1 + 142181 0.66 0.531881
Target:  5'- cGCGGGCCcuaauGGgaGGCG-CGGCcuccgGGCGg -3'
miRNA:   3'- cCGCCCGG-----CUgaCCGUgGCCGa----CCGC- -5'
31028 5' -64.9 NC_006560.1 + 134445 0.66 0.531881
Target:  5'- gGGCccGGCUGAC-GGCGCgGGC-GGCc -3'
miRNA:   3'- -CCGc-CCGGCUGaCCGUGgCCGaCCGc -5'
31028 5' -64.9 NC_006560.1 + 66764 0.66 0.535603
Target:  5'- gGGCGaGGaCGAC-GGCccccgcgcgguccgcGuCCGGCUGGCa -3'
miRNA:   3'- -CCGC-CCgGCUGaCCG---------------U-GGCCGACCGc -5'
31028 5' -64.9 NC_006560.1 + 65333 0.66 0.539334
Target:  5'- gGGUggGGGCCGGCU--CGCCGGCcccagccccgucGGCGg -3'
miRNA:   3'- -CCG--CCCGGCUGAccGUGGCCGa-----------CCGC- -5'
31028 5' -64.9 NC_006560.1 + 4750 0.66 0.541203
Target:  5'- cGGCGgcGGCCcGC-GGCGgCGGC-GGCGc -3'
miRNA:   3'- -CCGC--CCGGcUGaCCGUgGCCGaCCGC- -5'
31028 5' -64.9 NC_006560.1 + 55277 0.66 0.529096
Target:  5'- cGGCGacGCCGGCccacucgagcgcggUGGuCACCuGCUGGCc -3'
miRNA:   3'- -CCGCc-CGGCUG--------------ACC-GUGGcCGACCGc -5'
31028 5' -64.9 NC_006560.1 + 114184 0.66 0.526316
Target:  5'- cGCGGGCaacCGGCUGGgcccggcccagccccUGCCGGUcuuUGGCu -3'
miRNA:   3'- cCGCCCG---GCUGACC---------------GUGGCCG---ACCGc -5'
31028 5' -64.9 NC_006560.1 + 8900 0.66 0.513417
Target:  5'- cGCGGGCCacGCgUGGUcugucuuCCGGCgcggGGCGc -3'
miRNA:   3'- cCGCCCGGc-UG-ACCGu------GGCCGa---CCGC- -5'
31028 5' -64.9 NC_006560.1 + 80162 0.66 0.513417
Target:  5'- gGGCGGGUCGA--GGUcccCCGGCgGGUc -3'
miRNA:   3'- -CCGCCCGGCUgaCCGu--GGCCGaCCGc -5'
31028 5' -64.9 NC_006560.1 + 134888 0.66 0.513417
Target:  5'- cGCgGGGCCGGCgcauCACCGGCacgaGGCc -3'
miRNA:   3'- cCG-CCCGGCUGacc-GUGGCCGa---CCGc -5'
31028 5' -64.9 NC_006560.1 + 43419 0.66 0.513417
Target:  5'- cGCGGcGCCGGg-GGCGUCGGCgcgcGGCa -3'
miRNA:   3'- cCGCC-CGGCUgaCCGUGGCCGa---CCGc -5'
31028 5' -64.9 NC_006560.1 + 43853 0.66 0.513417
Target:  5'- uGCGGG-CGAC-GuGCGCCGGCgccaGCGg -3'
miRNA:   3'- cCGCCCgGCUGaC-CGUGGCCGac--CGC- -5'
31028 5' -64.9 NC_006560.1 + 67986 0.66 0.513417
Target:  5'- cGgGGGCCG-C-GGCGCCGuCgGGCGa -3'
miRNA:   3'- cCgCCCGGCuGaCCGUGGCcGaCCGC- -5'
31028 5' -64.9 NC_006560.1 + 94316 0.66 0.513417
Target:  5'- cGGCcaaccaGGGCgCGACcGuCGCCcggcGGCUGGCGg -3'
miRNA:   3'- -CCG------CCCG-GCUGaCcGUGG----CCGACCGC- -5'
31028 5' -64.9 NC_006560.1 + 55601 0.66 0.517089
Target:  5'- uGGUcGGCCG-CggcagcaccgucggGGCACCGG-UGGCGu -3'
miRNA:   3'- -CCGcCCGGCuGa-------------CCGUGGCCgACCGC- -5'
31028 5' -64.9 NC_006560.1 + 32797 0.66 0.522618
Target:  5'- gGGgGGGCCGGg-GGCGC-GGCcGGgGa -3'
miRNA:   3'- -CCgCCCGGCUgaCCGUGgCCGaCCgC- -5'
31028 5' -64.9 NC_006560.1 + 113003 0.66 0.522618
Target:  5'- gGGCGGGCaCGACcccgucuacgUGGCGgCCugcaaccugGGCacGGCGg -3'
miRNA:   3'- -CCGCCCG-GCUG----------ACCGU-GG---------CCGa-CCGC- -5'
31028 5' -64.9 NC_006560.1 + 150125 0.66 0.522618
Target:  5'- cGCGcGCCGGC-GGCcucagcuuCCGGCgGGCGc -3'
miRNA:   3'- cCGCcCGGCUGaCCGu-------GGCCGaCCGC- -5'
31028 5' -64.9 NC_006560.1 + 58243 0.66 0.522618
Target:  5'- gGGCcggGGGCCGcCgaGGCgagccGCCGGCcucGGCGu -3'
miRNA:   3'- -CCG---CCCGGCuGa-CCG-----UGGCCGa--CCGC- -5'
31028 5' -64.9 NC_006560.1 + 99225 0.66 0.522618
Target:  5'- cGGCGGGCUG-C-GGC-CCGGaaacgaggggGGCGu -3'
miRNA:   3'- -CCGCCCGGCuGaCCGuGGCCga--------CCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.