miRNA display CGI


Results 81 - 100 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31028 5' -64.9 NC_006560.1 + 121987 0.66 0.495221
Target:  5'- uGCGGGCCG-CgGuGUACCGGgaGGa- -3'
miRNA:   3'- cCGCCCGGCuGaC-CGUGGCCgaCCgc -5'
31028 5' -64.9 NC_006560.1 + 88889 0.66 0.495221
Target:  5'- cGGcCGGGCgagGGCcgGGuCGCCGGCcGGCc -3'
miRNA:   3'- -CC-GCCCGg--CUGa-CC-GUGGCCGaCCGc -5'
31028 5' -64.9 NC_006560.1 + 24532 0.66 0.495221
Target:  5'- uGCGGGcCCGACacGGcCGCCugGGCcGGCa -3'
miRNA:   3'- cCGCCC-GGCUGa-CC-GUGG--CCGaCCGc -5'
31028 5' -64.9 NC_006560.1 + 23764 0.66 0.495221
Target:  5'- cGUGGGCCucgucGCcGGCGCCGccgcgccgcuGCUGGCc -3'
miRNA:   3'- cCGCCCGGc----UGaCCGUGGC----------CGACCGc -5'
31028 5' -64.9 NC_006560.1 + 106579 0.66 0.495221
Target:  5'- cGgGGGCCGGggcCUGGCcgccCCGGUcguccGGCGg -3'
miRNA:   3'- cCgCCCGGCU---GACCGu---GGCCGa----CCGC- -5'
31028 5' -64.9 NC_006560.1 + 23034 0.66 0.495221
Target:  5'- aGGCcauGGGCUGGCUGcagaacccGCGCgugaCGGCcGGCGa -3'
miRNA:   3'- -CCG---CCCGGCUGAC--------CGUG----GCCGaCCGC- -5'
31028 5' -64.9 NC_006560.1 + 84697 0.67 0.489819
Target:  5'- cGGCGcGGgCGACgGGCGCCucGGCgccaccagccgcgaGGCGc -3'
miRNA:   3'- -CCGC-CCgGCUGaCCGUGG--CCGa-------------CCGC- -5'
31028 5' -64.9 NC_006560.1 + 54907 0.66 0.504283
Target:  5'- gGGCGGuaGCCGA--GGCGCUcgggGGCcggGGCGg -3'
miRNA:   3'- -CCGCC--CGGCUgaCCGUGG----CCGa--CCGC- -5'
31028 5' -64.9 NC_006560.1 + 81461 0.66 0.504283
Target:  5'- gGGCGcGGCCGGgaGagcgggggggaGCGCCGGCcccGCGg -3'
miRNA:   3'- -CCGC-CCGGCUgaC-----------CGUGGCCGac-CGC- -5'
31028 5' -64.9 NC_006560.1 + 100810 0.66 0.504283
Target:  5'- cGGCGGgggccauagcGCgGGCgcgGGgGCCGGCggaggggaggGGCGg -3'
miRNA:   3'- -CCGCC----------CGgCUGa--CCgUGGCCGa---------CCGC- -5'
31028 5' -64.9 NC_006560.1 + 134888 0.66 0.513417
Target:  5'- cGCgGGGCCGGCgcauCACCGGCacgaGGCc -3'
miRNA:   3'- cCG-CCCGGCUGacc-GUGGCCGa---CCGc -5'
31028 5' -64.9 NC_006560.1 + 80162 0.66 0.513417
Target:  5'- gGGCGGGUCGA--GGUcccCCGGCgGGUc -3'
miRNA:   3'- -CCGCCCGGCUgaCCGu--GGCCGaCCGc -5'
31028 5' -64.9 NC_006560.1 + 8900 0.66 0.513417
Target:  5'- cGCGGGCCacGCgUGGUcugucuuCCGGCgcggGGCGc -3'
miRNA:   3'- cCGCCCGGc-UG-ACCGu------GGCCGa---CCGC- -5'
31028 5' -64.9 NC_006560.1 + 110145 0.66 0.513417
Target:  5'- -aCGGGCCGGCUGuaCGCCccGCUGuGCGu -3'
miRNA:   3'- ccGCCCGGCUGACc-GUGGc-CGAC-CGC- -5'
31028 5' -64.9 NC_006560.1 + 52518 0.66 0.513417
Target:  5'- cGGCGGaGUCc-CUGGCGgaGGCgggGGCGu -3'
miRNA:   3'- -CCGCC-CGGcuGACCGUggCCGa--CCGC- -5'
31028 5' -64.9 NC_006560.1 + 51485 0.66 0.5125
Target:  5'- cGGCGGccccgagGCCGA--GGC-CCGGCccGGCGc -3'
miRNA:   3'- -CCGCC-------CGGCUgaCCGuGGCCGa-CCGC- -5'
31028 5' -64.9 NC_006560.1 + 148960 0.66 0.5125
Target:  5'- gGGCGGGaCGcGgUGGCgcgaccaACCGGC-GGCGc -3'
miRNA:   3'- -CCGCCCgGC-UgACCG-------UGGCCGaCCGC- -5'
31028 5' -64.9 NC_006560.1 + 116531 0.66 0.5125
Target:  5'- aGGCGGGCgGcgaUGGCGaCGGCcgaguccUGGCu -3'
miRNA:   3'- -CCGCCCGgCug-ACCGUgGCCG-------ACCGc -5'
31028 5' -64.9 NC_006560.1 + 75797 0.66 0.504283
Target:  5'- uGGCggagGGGCUG-CUGGCccucucgcagGCCGGg-GGCGg -3'
miRNA:   3'- -CCG----CCCGGCuGACCG----------UGGCCgaCCGC- -5'
31028 5' -64.9 NC_006560.1 + 117969 0.66 0.504283
Target:  5'- -cCGGuaCGugUGGCGCCugGGCgcGGCGg -3'
miRNA:   3'- ccGCCcgGCugACCGUGG--CCGa-CCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.